<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
<BlastOutput>
  <BlastOutput_program>blastx</BlastOutput_program>
  <BlastOutput_version>BLASTX 2.10.0+</BlastOutput_version>
  <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
  <BlastOutput_db>/home/smr/dbs/ensembl/release-100/Saccharomyces_cerevisiae.R64-1-1.pep.all.fa</BlastOutput_db>
  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
  <BlastOutput_query-def>PMZ_0004486-RA transcript Note:&quot;Similar to TMEM104 Transmembrane protein 104 (Gallus gallus)&quot; offset:85 AED:0.53 eAED:0.53 QI:85|0|0|0.66|0|0|3|0|47</BlastOutput_query-def>
  <BlastOutput_query-len>229</BlastOutput_query-len>
  <BlastOutput_param>
    <Parameters>
      <Parameters_matrix>BLOSUM62</Parameters_matrix>
      <Parameters_expect>1e-05</Parameters_expect>
      <Parameters_gap-open>11</Parameters_gap-open>
      <Parameters_gap-extend>1</Parameters_gap-extend>
      <Parameters_filter>L;</Parameters_filter>
    </Parameters>
  </BlastOutput_param>
<BlastOutput_iterations>
<Iteration>
  <Iteration_iter-num>1</Iteration_iter-num>
  <Iteration_query-ID>Query_1</Iteration_query-ID>
  <Iteration_query-def>PMZ_0004486-RA transcript Note:&quot;Similar to TMEM104 Transmembrane protein 104 (Gallus gallus)&quot; offset:85 AED:0.53 eAED:0.53 QI:85|0|0|0.66|0|0|3|0|47</Iteration_query-def>
  <Iteration_query-len>229</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>48</Statistics_hsp-len>
      <Statistics_eff-space>72723476</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>2</Iteration_iter-num>
  <Iteration_query-ID>Query_2</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053957-RA transcript Note:&quot;Similar to TMEM104 Transmembrane protein 104 (Gallus gallus)&quot; offset:0 AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|144</Iteration_query-def>
  <Iteration_query-len>435</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>81</Statistics_hsp-len>
      <Statistics_eff-space>152285888</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>3</Iteration_iter-num>
  <Iteration_query-ID>Query_3</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053954-RA transcript Note:&quot;Similar to Mrpl38 39S ribosomal protein L38, mitochondrial (Rattus norvegicus)&quot; offset:312 AED:0.12 eAED:0.12 QI:312|0.71|0.87|1|0.28|0.25|8|2307|303</Iteration_query-def>
  <Iteration_query-len>3531</Iteration_query-len>
<Iteration_hits>
<Hit>
  <Hit_num>1</Hit_num>
  <Hit_id>YLR178C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XII:513162:513821:-1 gene:YLR178C transcript:YLR178C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TFS1 description:Inhibitor of carboxypeptidase Y (Prc1p), and Ras GAP (Ira2p); phosphatidylethanolamine-binding protein (PEBP) family member and ortholog of hPEBP1/RKIP, a natural metastasis suppressor; targets to vacuolar membranes during stationary phase; acetylated by NatB N-terminal acetyltransferase; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004168]</Hit_def>
  <Hit_accession>YLR178C</Hit_accession>
  <Hit_len>219</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>52.7582</Hsp_bit-score>
      <Hsp_score>125</Hsp_score>
      <Hsp_evalue>5.54187e-08</Hsp_evalue>
      <Hsp_query-from>634</Hsp_query-from>
      <Hsp_query-to>1014</Hsp_query-to>
      <Hsp_hit-from>18</Hsp_hit-from>
      <Hsp_hit-to>175</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>44</Hsp_identity>
      <Hsp_positive>66</Hsp_positive>
      <Hsp_gaps>41</Hsp_gaps>
      <Hsp_align-len>163</Hsp_align-len>
      <Hsp_qseq>YGIYRDMYKGAEFVPRVMLRVAYALPKEDATAPVYYGNVLMPFETQEAPEVTFEAN----------------EDSLWTLILTNLDG------------HLQDNESEYLHWFVGNIPGG--------RVSMGQTVCHYLTPFPAKGTGYHRLVFLLYKQEHLLD</Hsp_qseq>
      <Hsp_hseq>HGILEDVIHDTSFQPSGILAVEYS-----SSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVD</Hsp_hseq>
      <Hsp_midline>+GI  D+     F P  +L V Y+     ++APV  GN L   + +  P+  F  N                +D L+TL++T+ D             HL + + + L+       G               T+  Y+ P P KG+G HR VFLLYKQ   +D</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>101</Statistics_hsp-len>
      <Statistics_eff-space>2418274492</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
</Iteration>
<Iteration>
  <Iteration_iter-num>4</Iteration_iter-num>
  <Iteration_query-ID>Query_4</Iteration_query-ID>
  <Iteration_query-def>PMZ_0042658-RA transcript Note:&quot;Similar to Snn Stannin (Rattus norvegicus)&quot; offset:0 AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|107</Iteration_query-def>
  <Iteration_query-len>324</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>76</Statistics_hsp-len>
      <Statistics_eff-space>77198944</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>5</Iteration_iter-num>
  <Iteration_query-ID>Query_5</Iteration_query-ID>
  <Iteration_query-def>PMZ_0004484-RA transcript Note:&quot;Similar to MAOA Amine oxidase [flavin-containing] A (Homo sapiens)&quot; offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|0|0.5|2|0|101</Iteration_query-def>
  <Iteration_query-len>306</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>72</Statistics_hsp-len>
      <Statistics_eff-space>73166010</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>6</Iteration_iter-num>
  <Iteration_query-ID>Query_6</Iteration_query-ID>
  <Iteration_query-def>PMZ_0004490-RA transcript Note:&quot;Similar to maoA Probable flavin-containing monoamine oxidase A (Dictyostelium discoideum)&quot; offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|0|0|6|188|259</Iteration_query-def>
  <Iteration_query-len>968</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>90</Statistics_hsp-len>
      <Statistics_eff-space>538255544</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>7</Iteration_iter-num>
  <Iteration_query-ID>Query_7</Iteration_query-ID>
  <Iteration_query-def>PMZ_0004489-RA transcript Note:&quot;Protein of unknown function&quot; offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|0.5|0.66|3|2|148</Iteration_query-def>
  <Iteration_query-len>446</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>81</Statistics_hsp-len>
      <Statistics_eff-space>159424289</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>8</Iteration_iter-num>
  <Iteration_query-ID>Query_8</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053956-RA transcript Note:&quot;Similar to NAT9 N-acetyltransferase 9 (Homo sapiens)&quot; offset:270 AED:0.34 eAED:0.34 QI:270|0.66|1|1|0.66|0.5|4|1422|153</Iteration_query-def>
  <Iteration_query-len>2154</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>97</Statistics_hsp-len>
      <Statistics_eff-space>1412071407</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>9</Iteration_iter-num>
  <Iteration_query-ID>Query_9</Iteration_query-ID>
  <Iteration_query-def>PMZ_0042660-RA transcript Note:&quot;Similar to Grin2c Glutamate receptor ionotropic, NMDA 2C (Rattus norvegicus)&quot; offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|0.36|0.16|12|223|644</Iteration_query-def>
  <Iteration_query-len>2158</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>97</Statistics_hsp-len>
      <Statistics_eff-space>1414345274</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>10</Iteration_iter-num>
  <Iteration_query-ID>Query_10</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053958-RA transcript Note:&quot;Similar to grin2b Glutamate receptor ionotropic, NMDA 2B (Xenopus laevis)&quot; offset:0 AED:0.12 eAED:0.12 QI:0|0|0|0.8|1|1|5|0|465</Iteration_query-def>
  <Iteration_query-len>1398</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>93</Statistics_hsp-len>
      <Statistics_eff-space>857999591</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>11</Iteration_iter-num>
  <Iteration_query-ID>Query_11</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053960-RA transcript Note:&quot;Similar to Nlrc3 Protein NLRC3 (Mus musculus)&quot; offset:582 AED:0.07 eAED:0.07 QI:582|0.6|0.83|1|0.4|0.16|6|2581|754</Iteration_query-def>
  <Iteration_query-len>5428</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>104</Statistics_hsp-len>
      <Statistics_eff-space>3798172235</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>12</Iteration_iter-num>
  <Iteration_query-ID>Query_12</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053961-RA transcript Note:&quot;Similar to U2AF2 Splicing factor U2AF 65 kDa subunit (Homo sapiens)&quot; offset:129 AED:0.30 eAED:0.30 QI:129|0.55|0.7|1|1|1|10|1099|400</Iteration_query-def>
  <Iteration_query-len>2431</Iteration_query-len>
<Iteration_hits>
<Hit>
  <Hit_num>1</Hit_num>
  <Hit_id>YGL044C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VII:416146:417036:-1 gene:YGL044C transcript:YGL044C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA15 description:Component of the cleavage and polyadenylation factor I (CF I); CF 1, composed of the CF 1A complex (Rna14p, Rna15p, Clp1p, Pcf11p) and Hrp1, is involved in cleavage and polyadenylation of mRNA 3&apos; ends; interacts with the A-rich polyadenylation signal in complex with Rna14p and Hrp1p; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; required for gene looping and maintenance of genome stability [Source:SGD;Acc:S000003012]</Hit_def>
  <Hit_accession>YGL044C</Hit_accession>
  <Hit_len>296</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>55.4546</Hsp_bit-score>
      <Hsp_score>132</Hsp_score>
      <Hsp_evalue>1.1415e-08</Hsp_evalue>
      <Hsp_query-from>640</Hsp_query-from>
      <Hsp_query-to>888</Hsp_query-to>
      <Hsp_hit-from>6</Hsp_hit-from>
      <Hsp_hit-to>89</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>29</Hsp_identity>
      <Hsp_positive>50</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>84</Hsp_align-len>
      <Hsp_qseq>GVVSTVVQDTPHKL-FIGGLPSYLTDDQVKELLTSFGPLKAFNLVKDSATCFSKGYAFCEYADVNVTDQAIAGLNGMQLGDKKL</Hsp_qseq>
      <Hsp_hseq>GVNAGVQNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL</Hsp_hseq>
      <Hsp_midline>GV + V  + P ++ ++G +P   T++Q+ +L ++ GP+    ++ D  T  SKGYAF E+ D+  +  A+  LNG QLG + L</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>2</Hit_num>
  <Hit_id>YER165W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:V:510373:512106:1 gene:YER165W transcript:YER165W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PAB1 description:Poly(A) binding protein; part of the 3&apos;-end RNA-processing complex, mediates interactions between the 5&apos; cap structure and the 3&apos; mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967]</Hit_def>
  <Hit_accession>YER165W</Hit_accession>
  <Hit_len>577</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>51.6026</Hsp_bit-score>
      <Hsp_score>122</Hsp_score>
      <Hsp_evalue>4.20716e-07</Hsp_evalue>
      <Hsp_query-from>487</Hsp_query-from>
      <Hsp_query-to>903</Hsp_query-to>
      <Hsp_hit-from>168</Hsp_hit-from>
      <Hsp_hit-to>294</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>39</Hsp_identity>
      <Hsp_positive>64</Hsp_positive>
      <Hsp_gaps>24</Hsp_gaps>
      <Hsp_align-len>145</Hsp_align-len>
      <Hsp_qseq>FGVTEFRSVDETTQAL-AFDGIIFQGQSLKL-----RRPHDYQPLPGMSESPALHVPGVVSTVVQDTPHKLFIGGLPSYLTDDQVKELLTSFGPLKAFNLVKDSATCFSKGYAFCEYADVNVTDQAIAGLNGMQLGDKKLIVQRA</Hsp_qseq>
      <Hsp_hseq>FGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQ----LEETKAHYT-------------NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA</Hsp_hseq>
      <Hsp_midline>FG   F       +A+ A +G++  GQ + +     R+  D Q    + E+ A +               L++  + S  TD+Q +EL   FGP+ + +L KD+     KG+ F  Y       +A+  LN  +L  +KL V RA</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>98</Statistics_hsp-len>
      <Statistics_eff-space>1614294104</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
</Iteration>
<Iteration>
  <Iteration_iter-num>13</Iteration_iter-num>
  <Iteration_query-ID>Query_13</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053964-RA transcript Note:&quot;Similar to nol12 Nucleolar protein 12 (Xenopus tropicalis)&quot; offset:159 AED:0.43 eAED:0.43 QI:159|1|0.8|1|1|1|5|0|174</Iteration_query-def>
  <Iteration_query-len>684</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>86</Statistics_hsp-len>
      <Statistics_eff-space>333198314</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>14</Iteration_iter-num>
  <Iteration_query-ID>Query_14</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053966-RA transcript Note:&quot;Similar to RASD1 Dexamethasone-induced Ras-related protein 1 (Homo sapiens)&quot; offset:0 AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|265</Iteration_query-def>
  <Iteration_query-len>798</Iteration_query-len>
<Iteration_hits>
<Hit>
  <Hit_num>1</Hit_num>
  <Hit_id>YGR152C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VII:794674:795492:-1 gene:YGR152C transcript:YGR152C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RSR1 description:GTP-binding protein of the Ras superfamily; required for bud site selection, morphological changes in response to mating pheromone, and efficient cell fusion; localized to the plasma membrane; significantly similar to mammalian Rap GTPases [Source:SGD;Acc:S000003384]</Hit_def>
  <Hit_accession>YGR152C</Hit_accession>
  <Hit_len>272</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>93.2041</Hsp_bit-score>
      <Hsp_score>230</Hsp_score>
      <Hsp_evalue>4.55799e-23</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>375</Hsp_query-to>
      <Hsp_hit-from>6</Hsp_hit-from>
      <Hsp_hit-to>119</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>53</Hsp_identity>
      <Hsp_positive>74</Hsp_positive>
      <Hsp_gaps>13</Hsp_gaps>
      <Hsp_align-len>126</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTIEDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACR-PLVLCGNKGD</Hsp_qseq>
      <Hsp_hseq>LVVLGAGGVGKSCLTVQFVQGVYLDTYDPTIEDSYRKTIEIDNKVFDLEILDTAGIAQFTAMRELYIKSGMGFLLVYSVTDRQSLEELMELREQVLRI------------KDSDRVPMVLIGNKAD</Hsp_hseq>
      <Hsp_midline>+VVLGA  VGK+ L  +F+ G + D Y PTIED +RK   I  +++ L+ILDT+G   F AMR L + +G  F++V+S+  R S EE  +LR Q+L               D+ R P+VL GNK D</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>2</Hit_num>
  <Hit_id>YOR101W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XV:515244:516173:1 gene:YOR101W transcript:YOR101W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAS1 description:GTPase involved in G-protein signaling in adenylate cyclase activation; plays a role in cell proliferation; localized to the plasma membrane; homolog of mammalian RAS proto-oncogenes; relative distribution to the nucleus increases upon DNA replication stress; RAS1 has a paralog, RAS2, that arose from the whole genome duplication [Source:SGD;Acc:S000005627]</Hit_def>
  <Hit_accession>YOR101W</Hit_accession>
  <Hit_len>309</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>75.8702</Hsp_bit-score>
      <Hsp_score>185</Hsp_score>
      <Hsp_evalue>1.8039e-16</Hsp_evalue>
      <Hsp_query-from>31</Hsp_query-from>
      <Hsp_query-to>561</Hsp_query-to>
      <Hsp_hit-from>23</Hsp_hit-from>
      <Hsp_hit-to>185</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>57</Hsp_identity>
      <Hsp_positive>85</Hsp_positive>
      <Hsp_gaps>14</Hsp_gaps>
      <Hsp_align-len>177</Hsp_align-len>
      <Hsp_qseq>KTALVSRFLLGRFEDAYTPTIEDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACRPLVLCGNKGDRGDACXXXXXXXXXXXXXGDAAGSAYFEISAKRNTGVDEMFQALFALAGLPSEMSPALHRKL</Hsp_qseq>
      <Hsp_hseq>KSALTIQFIQSYFVDEYDPTIEDSYRKQVVIDDKVSILDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQRVKDSDYI-----------PVVVVGNKLDLENERQVSYEDGLRLAKQLNA---PFLETSAKQAINVDEAFYSLIRLVRDDGGKYNSMNRQL</Hsp_hseq>
      <Hsp_midline>K+AL  +F+   F D Y PTIED +RK   I  ++  LDILDT+G   + AMR   + TG+ F++V+S+ SR SF+E      QI   K                P+V+ GNK D  +  +           + +A    + E SAK+   VDE F +L  L         +++R+L</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>3</Hit_num>
  <Hit_id>YNL098C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIV:439602:440570:-1 gene:YNL098C transcript:YNL098C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAS2 description:GTP-binding protein; regulates nitrogen starvation response, sporulation, and filamentous growth; farnesylation and palmitoylation required for activity and localization to plasma membrane; homolog of mammalian Ras proto-oncogenes; RAS2 has a paralog, RAS1, that arose from the whole genome duplication [Source:SGD;Acc:S000005042]</Hit_def>
  <Hit_accession>YNL098C</Hit_accession>
  <Hit_len>322</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>72.7886</Hsp_bit-score>
      <Hsp_score>177</Hsp_score>
      <Hsp_evalue>1.98118e-15</Hsp_evalue>
      <Hsp_query-from>31</Hsp_query-from>
      <Hsp_query-to>516</Hsp_query-to>
      <Hsp_hit-from>23</Hsp_hit-from>
      <Hsp_hit-to>170</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>52</Hsp_identity>
      <Hsp_positive>77</Hsp_positive>
      <Hsp_gaps>14</Hsp_gaps>
      <Hsp_align-len>162</Hsp_align-len>
      <Hsp_qseq>KTALVSRFLLGRFEDAYTPTIEDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACRPLVLCGNKGDRGDACXXXXXXXXXXXXXGDAAGSAYFEISAKRNTGVDEMFQALFAL</Hsp_qseq>
      <Hsp_hseq>KSALTIQLTQSHFVDEYDPTIEDSYRKQVVIDDEVSILDILDTAGQEEYSAMREQYMRNGEGFLLVYSITSKSSLDELMTYYQQILRVKDTDYV-----------PIVVVGNKSDLENEKQVSYQDGLNMAKQMNA---PFLETSAKQAINVEEAFYTLARL</Hsp_hseq>
      <Hsp_midline>K+AL  +     F D Y PTIED +RK   I  E+  LDILDT+G   + AMR   +  G+ F++V+S+ S++S +E      QIL  K                P+V+ GNK D  +  +   +       + +A    + E SAK+   V+E F  L  L</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>4</Hit_num>
  <Hit_id>YLR229C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XII:604212:604787:-1 gene:YLR229C transcript:YLR229C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CDC42 description:Small rho-like GTPase; essential for establishment and maintenance of cell polarity; plays a role late in cell fusion via activation of key cell fusion regulator Fus2p; mutants have defects in the organization of actin and septins; human homolog CDC42 can complement yeast cdc42 mutant [Source:SGD;Acc:S000004219]</Hit_def>
  <Hit_accession>YLR229C</Hit_accession>
  <Hit_len>191</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>58.151</Hsp_bit-score>
      <Hsp_score>139</Hsp_score>
      <Hsp_evalue>7.01232e-11</Hsp_evalue>
      <Hsp_query-from>4</Hsp_query-from>
      <Hsp_query-to>270</Hsp_query-to>
      <Hsp_hit-from>7</Hsp_hit-from>
      <Hsp_hit-to>95</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>32</Hsp_identity>
      <Hsp_positive>47</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>89</Hsp_align-len>
      <Hsp_qseq>VVLGASKVGKTALVSRFLLGRFEDAYTPTIEDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQ</Hsp_qseq>
      <Hsp_hseq>VVVGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPPSFENVKE</Hsp_hseq>
      <Hsp_midline>VV+G   VGKT L+  +   +F   Y PT+ D +     I  E Y L + DT+G   +  +R L   + D+F+V FS+ S  SFE  K+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>5</Hit_num>
  <Hit_id>YOR185C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XV:681444:682106:-1 gene:YOR185C transcript:YOR185C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GSP2 description:GTP binding protein (mammalian Ranp homolog); involved in the maintenance of nuclear organization, RNA processing and transport; interacts with Kap121p, Kap123p and Pdr6p (karyophilin betas); not required for viability; protein abundance increases in response to DNA replication stress; GSP2 has a paralog, GSP1, that arose from the whole genome duplication [Source:SGD;Acc:S000005711]</Hit_def>
  <Hit_accession>YOR185C</Hit_accession>
  <Hit_len>220</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>56.9954</Hsp_bit-score>
      <Hsp_score>136</Hsp_score>
      <Hsp_evalue>2.87331e-10</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>549</Hsp_query-to>
      <Hsp_hit-from>16</Hsp_hit-from>
      <Hsp_hit-to>185</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>52</Hsp_identity>
      <Hsp_positive>81</Hsp_positive>
      <Hsp_gaps>25</Hsp_gaps>
      <Hsp_align-len>189</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTI--EDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACRPLVLCGNKGDRGDACXXXXXXXXXXXXXGDAAGSAYFEISAKRNTGVDEMFQALF-ALAGLPS---EMSPAL</Hsp_qseq>
      <Hsp_hseq>LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEI-KFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENI-------------PIVLCGNKVDVKE-----RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL</Hsp_hseq>
      <Hsp_midline>+V++G    GKT  V R L G FE  Y  TI  E      Y   GE+ + D+ DT+G   F  +R    +     +++F + SR +++        ++     +             P+VLCGNK D  +      + +A+ +         Y++ISAK N   ++ F  L   LAG P      SPAL</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>6</Hit_num>
  <Hit_id>YLR293C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XII:720771:721430:-1 gene:YLR293C transcript:YLR293C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GSP1 description:Ran GTPase; GTP binding protein (mammalian Ranp homolog) involved in the maintenance of nuclear organization, RNA processing and transport; regulated by Srm1p, Rna1p, Yrb1p, Yrb2p, Yrp4p, Yrb30p, Cse1p and Kap95p; GSP1 has a paralog, GSP2, that arose from the whole genome duplication [Source:SGD;Acc:S000004284]</Hit_def>
  <Hit_accession>YLR293C</Hit_accession>
  <Hit_len>219</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>56.6102</Hsp_bit-score>
      <Hsp_score>135</Hsp_score>
      <Hsp_evalue>3.22054e-10</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>549</Hsp_query-to>
      <Hsp_hit-from>15</Hsp_hit-from>
      <Hsp_hit-to>184</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>52</Hsp_identity>
      <Hsp_positive>81</Hsp_positive>
      <Hsp_gaps>25</Hsp_gaps>
      <Hsp_align-len>189</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTI--EDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACRPLVLCGNKGDRGDACXXXXXXXXXXXXXGDAAGSAYFEISAKRNTGVDEMFQALF-ALAGLPS---EMSPAL</Hsp_qseq>
      <Hsp_hseq>LVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEI-KFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENI-------------PIVLCGNKVDVKE-----RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL</Hsp_hseq>
      <Hsp_midline>+V++G    GKT  V R L G FE  Y  TI  E      Y   GE+ + D+ DT+G   F  +R    +     +++F + SR +++        ++     +             P+VLCGNK D  +      + +A+ +         Y++ISAK N   ++ F  L   LAG P      SPAL</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>7</Hit_num>
  <Hit_id>YKR055W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XI:548216:549091:1 gene:YKR055W transcript:YKR055W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RHO4 description:Non-essential small GTPase; member of the Rho/Rac subfamily of Ras-like proteins; likely to be involved in the establishment of cell polarity; has long N-terminal extension that plays an important role in Rho4p function and is shared with Rho4 homologs in other yeasts and filamentous fungi [Source:SGD;Acc:S000001763]</Hit_def>
  <Hit_accession>YKR055W</Hit_accession>
  <Hit_len>291</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>55.4546</Hsp_bit-score>
      <Hsp_score>132</Hsp_score>
      <Hsp_evalue>1.45215e-09</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>504</Hsp_query-to>
      <Hsp_hit-from>75</Hsp_hit-from>
      <Hsp_hit-to>233</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>41</Hsp_identity>
      <Hsp_positive>77</Hsp_positive>
      <Hsp_gaps>15</Hsp_gaps>
      <Hsp_align-len>171</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTI-EDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACRPLVLCGNKGD--RGDACXXXXXXXXXXXXXGDAAGSAYFEISAKRNTGVDEMFQA</Hsp_qseq>
      <Hsp_hseq>IVVVGDGAVGKTCLLISYVQGTFPTDYIPTIFENYVTNIEGPNGQIIELALWDTAGQEEYSRLRPLSYTNADVLMVCYSVGSKTSLKNVEDLWFPEVKHFC------------PSTPIMLVGLKSDLYEADNLSDLVEPSSAESLAKRLGAFAHIQCSARLKENIDEVFET</Hsp_hseq>
      <Hsp_midline>+VV+G   VGKT L+  ++ G F   Y PTI E++   +    G++ +L + DT+G   +  +R L     D+ +V +S+ S+ S +  + L    ++                  P++L G K D    D   ++    + E +       A+ + SA+    +DE+F+ </Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>8</Hit_num>
  <Hit_id>YCR027C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:III:167370:167999:-1 gene:YCR027C transcript:YCR027C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RHB1 description:Putative Rheb-related GTPase; involved in regulating canavanine resistance and arginine uptake; member of the Ras superfamily of G-proteins [Source:SGD;Acc:S000000622]</Hit_def>
  <Hit_accession>YCR027C</Hit_accession>
  <Hit_len>209</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>53.5286</Hsp_bit-score>
      <Hsp_score>127</Hsp_score>
      <Hsp_evalue>3.74604e-09</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>510</Hsp_query-to>
      <Hsp_hit-from>19</Hsp_hit-from>
      <Hsp_hit-to>186</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>47</Hsp_identity>
      <Hsp_positive>78</Hsp_positive>
      <Hsp_gaps>20</Hsp_gaps>
      <Hsp_align-len>179</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTIEDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACRPLVLCGNKGDRGDA------CXXXXXXXXXXXXXGDA---AGSAYFEISAKRNTGVDEMFQALF</Hsp_qseq>
      <Hsp_hseq>IALIGARNVGKTTLTVRFVESRFVESYYPTIENEFTRIIPYKSHDCTLEILDTAGQDEVSLLNIKSLTGVRGIILCYSIINRASFDLIPILWDKLVDQLGKDNL-----------PVILVGTKADLGRSTKGVKRCVTKAEGEKLASTIGSQDKRNQAAFIECSAELDYNVEETFMLLL</Hsp_hseq>
      <Hsp_midline>+ ++GA  VGKT L  RF+  RF ++Y PTIE+   ++   +     L+ILDT+G      +    L      ++ +S+ +RASF+    L  ++++                  P++L G K D G +      C   A  E      G       +A+ E SA+ +  V+E F  L </Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>9</Hit_num>
  <Hit_id>YNL093W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIV:449868:450530:1 gene:YNL093W transcript:YNL093W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YPT53 description:Stress-induced Rab family GTPase; required for vacuolar protein sorting and endocytosis; involved in ionic stress tolerance; similar to Vps21p and Ypt52p; functional homolog of Vps21p; mammalian Rab5 homolog; YPT53 has a paralog, VPS21, that arose from the whole genome duplication [Source:SGD;Acc:S000005037]</Hit_def>
  <Hit_accession>YNL093W</Hit_accession>
  <Hit_len>220</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>53.1434</Hsp_bit-score>
      <Hsp_score>126</Hsp_score>
      <Hsp_evalue>5.03646e-09</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>507</Hsp_query-to>
      <Hsp_hit-from>15</Hsp_hit-from>
      <Hsp_hit-to>175</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>47</Hsp_identity>
      <Hsp_positive>77</Hsp_positive>
      <Hsp_gaps>16</Hsp_gaps>
      <Hsp_align-len>173</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTI-EDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACRPLVLCGNKGD---RGDACXXXXXXXXXXXXXGDAAGSAYFEISAKRNTGVDEMFQAL</Hsp_qseq>
      <Hsp_hseq>VVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEIWDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHE----------KVGHDIV--IALVGNKMDLLNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTL</Hsp_hseq>
      <Hsp_midline>+V+LG S VGK+++V RF+   F+++  PTI   F  K     G++ + +I DT+G   F  +  +        +VVF + +  SF +A+    ++ E           + HD    + L GNK D     D     A +        +     YFE SAK    + ++FQ L</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>10</Hit_num>
  <Hit_id>YIL118W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:IX:139752:140447:1 gene:YIL118W transcript:YIL118W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RHO3 description:Non-essential small GTPase of the Rho/Rac family of Ras-like proteins; involved in the establishment of cell polarity; GTPase activity positively regulated by the GTPase activating protein (GAP) Rgd1p [Source:SGD;Acc:S000001380]</Hit_def>
  <Hit_accession>YIL118W</Hit_accession>
  <Hit_len>231</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>51.9878</Hsp_bit-score>
      <Hsp_score>123</Hsp_score>
      <Hsp_evalue>1.47873e-08</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>270</Hsp_query-to>
      <Hsp_hit-from>19</Hsp_hit-from>
      <Hsp_hit-to>108</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>28</Hsp_identity>
      <Hsp_positive>48</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>91</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTI-EDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQ</Hsp_qseq>
      <Hsp_hseq>IVILGDGACGKTSLLNVFTRGYFPEVYEPTVFENYIHDIF-VDSKHITLSLWDTAGQEEFDRLRSLSYSDTQCIMLCFSIDSRDSLENVQN</Hsp_hseq>
      <Hsp_midline>+V+LG    GKT+L++ F  G F + Y PT+ E++   ++ +  +   L + DT+G   F  +R L        ++ FS+DSR S E  + </Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>11</Hit_num>
  <Hit_id>YNL090W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIV:456565:457143:1 gene:YNL090W transcript:YNL090W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RHO2 description:Non-essential small GTPase of the Rho/Rac family of Ras-like proteins; involved in the establishment of cell polarity and in microtubule assembly [Source:SGD;Acc:S000005034]</Hit_def>
  <Hit_accession>YNL090W</Hit_accession>
  <Hit_len>192</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>51.2174</Hsp_bit-score>
      <Hsp_score>121</Hsp_score>
      <Hsp_evalue>1.79708e-08</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>501</Hsp_query-to>
      <Hsp_hit-from>10</Hsp_hit-from>
      <Hsp_hit-to>171</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>46</Hsp_identity>
      <Hsp_positive>74</Hsp_positive>
      <Hsp_gaps>19</Hsp_gaps>
      <Hsp_align-len>174</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTIEDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACRPLVLCGNKGDRGDACXXXXXXXXXXXXXGDAAGSA-------YFEISAKRNTGVDEMFQ</Hsp_qseq>
      <Hsp_hseq>LVIIGDGACGKTSLLYVFTLGKFPEQYHPTVFENYVTDCRVDGIKVSLTLWDTAGQEEYERLRPFSYSKADIILIGFAVD---NFESLINARTKWADEALRYCP-------DA--PIVLVGLKKDLRQEAHFKENATDEMVPIEDAKQVARAIGAKKYMECSALTGEGVDDVFE</Hsp_hseq>
      <Hsp_midline>+V++G    GKT+L+  F LG+F + Y PT+ + +    R+ G    L + DT+G   +  +R       D+ ++ F++D   +FE     R +  +              DA  P+VL G K D             E +   DA   A       Y E SA    GVD++F+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>12</Hit_num>
  <Hit_id>YLR262C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XII:668244:668891:-1 gene:YLR262C transcript:YLR262C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YPT6 description:Rab family GTPase; required for endosome-to-Golgii, intra-Golgi retrograde, and retrograde Golgi-to-ER transport; temporarily at the Golgi, dissociating into the cytosol on arrival of the late Golgi GTPase Ypt32p; Golgi-localized form is GTP bound, while cytosolic form is GDP-bound; required for delivery of Atg9p to the phagophore assembly site during autophagy under heat stress, with Ypt6p for starvation induced autophagy and for the CVT pathway; homolog of mammalian Rab6 [Source:SGD;Acc:S000004252]</Hit_def>
  <Hit_accession>YLR262C</Hit_accession>
  <Hit_len>215</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>51.6026</Hsp_bit-score>
      <Hsp_score>122</Hsp_score>
      <Hsp_evalue>2.05595e-08</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>258</Hsp_query-to>
      <Hsp_hit-from>13</Hsp_hit-from>
      <Hsp_hit-to>99</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>28</Hsp_identity>
      <Hsp_positive>47</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>87</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTIE-DFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFE</Hsp_qseq>
      <Hsp_hseq>IVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFE</Hsp_hseq>
      <Hsp_midline>+V LG   VGKT+L++RF+   F+D Y  TI  DF  K   +  +  +L + DT+G   F ++    +    + ++V+ +  R SFE</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>13</Hit_num>
  <Hit_id>YPR165W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XVI:875368:875997:1 gene:YPR165W transcript:YPR165W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RHO1 description:GTP-binding protein of the rho subfamily of Ras-like proteins; involved in establishment of cell polarity; regulates protein kinase C (Pkc1p) and the cell wall synthesizing enzyme 1,3-beta-glucan synthase (Fks1p and Gsc2p) [Source:SGD;Acc:S000006369]</Hit_def>
  <Hit_accession>YPR165W</Hit_accession>
  <Hit_len>209</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>51.2174</Hsp_bit-score>
      <Hsp_score>121</Hsp_score>
      <Hsp_evalue>2.29856e-08</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>504</Hsp_query-to>
      <Hsp_hit-from>13</Hsp_hit-from>
      <Hsp_hit-to>178</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>44</Hsp_identity>
      <Hsp_positive>78</Hsp_positive>
      <Hsp_gaps>24</Hsp_gaps>
      <Hsp_align-len>179</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTIEDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRL-QILETXXXXXXXXXXXXHDACRPLVLCGNKGD-RGDACXXXXXXXXXXXXXGDAAG---------SAYFEISAKRNTGVDEMFQA</Hsp_qseq>
      <Hsp_hseq>LVIVGDGACGKTCLLIVFSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGV-------------PIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEA</Hsp_hseq>
      <Hsp_midline>+V++G    GKT L+  F  G+F + Y PT+ + +     + G   +L + DT+G   +  +R L     ++ ++ FS+D   S E  ++  + ++L     +             P++L G K D R D       R+  +       G         + Y+E SAK   GV E+F+A</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>14</Hit_num>
  <Hit_id>YML001W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIII:267174:267800:1 gene:YML001W transcript:YML001W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:YPT7 description:Rab family GTPase; GTP-binding protein of the rab family; required for homotypic fusion event in vacuole inheritance, for endosome-endosome fusion; localizes to sites of contact between the vacuole and mitochondria (vCLAMPs); interacts with the cargo selection/retromer complex for retrograde sorting; similar to mammalian Rab7 [Source:SGD;Acc:S000004460]</Hit_def>
  <Hit_accession>YML001W</Hit_accession>
  <Hit_len>208</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>50.0618</Hsp_bit-score>
      <Hsp_score>118</Hsp_score>
      <Hsp_evalue>6.34974e-08</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>375</Hsp_query-to>
      <Hsp_hit-from>11</Hsp_hit-from>
      <Hsp_hit-to>129</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>35</Hsp_identity>
      <Hsp_positive>60</Hsp_positive>
      <Hsp_gaps>10</Hsp_gaps>
      <Hsp_align-len>127</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTI-EDFHRKLYRIRGE-LYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACRPLVLCGNKGD</Hsp_qseq>
      <Hsp_hseq>VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL--------VHANVNSPETFPFVILGNKID</Hsp_hseq>
      <Hsp_midline>+++LG S VGKT+L+ R++  ++   Y  TI  DF  K   + G+ +  + + DT+G   F ++        D  V+V+ + + +SFE  K  R + L            +      P V+ GNK D</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>15</Hit_num>
  <Hit_id>YFL005W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VI:130334:130981:1 gene:YFL005W transcript:YFL005W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SEC4 description:Rab family GTPase; essential for vesicle-mediated exocytic secretion and autophagy; associates with the exocyst component Sec15p and may regulate polarized delivery of transport vesicles to the exocyst at the plasma membrane [Source:SGD;Acc:S000001889]</Hit_def>
  <Hit_accession>YFL005W</Hit_accession>
  <Hit_len>215</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>47.3654</Hsp_bit-score>
      <Hsp_score>111</Hsp_score>
      <Hsp_evalue>4.86394e-07</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>534</Hsp_query-to>
      <Hsp_hit-from>23</Hsp_hit-from>
      <Hsp_hit-to>182</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>47</Hsp_identity>
      <Hsp_positive>76</Hsp_positive>
      <Hsp_gaps>20</Hsp_gaps>
      <Hsp_align-len>179</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTIE-DFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACRPLVLCGNKGDRGDACXXXXXXXXXXXXXGDAAGSAYFEISAKRNTGVDEMFQALFALAGLPSE</Hsp_qseq>
      <Hsp_hseq>ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNE-----------HANDEAQ-LLLVGNKSD----METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF---FTLAKLIQE</Hsp_hseq>
      <Hsp_midline>++++G S VGK+ L+ RF+  +F  ++  TI  DF  K   I G+  +L + DT+G   F  +           ++V+ +    +F   KQ    + E            A+D  + L+L GNK D             +        G  + E SAK +  V+E+F   F LA L  E</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>16</Hit_num>
  <Hit_id>YNL180C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIV:299654:300649:-1 gene:YNL180C transcript:YNL180C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RHO5 description:Non-essential small GTPase of the Rho/Rac family of Ras-like proteins; RAC1 ortholog; regulated by phosphorylation and ubiquitination; likely involved in protein kinase C (Pkc1p)-dependent signal transduction pathway that controls cell integrity [Source:SGD;Acc:S000005124]</Hit_def>
  <Hit_accession>YNL180C</Hit_accession>
  <Hit_len>331</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>48.1358</Hsp_bit-score>
      <Hsp_score>113</Hsp_score>
      <Hsp_evalue>5.44309e-07</Hsp_evalue>
      <Hsp_query-from>4</Hsp_query-from>
      <Hsp_query-to>255</Hsp_query-to>
      <Hsp_hit-from>7</Hsp_hit-from>
      <Hsp_hit-to>120</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>30</Hsp_identity>
      <Hsp_positive>49</Hsp_positive>
      <Hsp_gaps>30</Hsp_gaps>
      <Hsp_align-len>114</Hsp_align-len>
      <Hsp_qseq>VVLGASKVGKTALVSRFLLGRFEDAYTPTIEDFHRKLYRI-----------------RG-------------ELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASF</Hsp_qseq>
      <Hsp_hseq>VIIGDGAVGKTSLLISYTTNSFPTDYVPTVFDNYSTTIAIPNGTASSPLELDNGNDKRGSLSSASSSPSTDRKLYKINLWDTAGQEDYDRLRPLCYPQTDIFLICFSVSEHASF</Hsp_hseq>
      <Hsp_midline>V++G   VGKT+L+  +    F   Y PT+ D +     I                 RG             +LY++++ DT+G   +  +R LC    D+F++ FS+   ASF</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>17</Hit_num>
  <Hit_id>YOR089C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XV:490196:490828:-1 gene:YOR089C transcript:YOR089C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VPS21 description:Endosomal Rab family GTPase; required for endocytic transport and sorting of vacuolar hydrolases; required for endosomal localization of the CORVET complex; required with YPT52 for MVB biogenesis and sorting; involved in autophagy and ionic stress tolerance; geranylgeranylation required for membrane association; protein abundance increases in response to DNA replication stress; mammalian Rab5 homolog; VPS21 has a paralog, YPT53, that arose from the whole genome duplication [Source:SGD;Acc:S000005615]</Hit_def>
  <Hit_accession>YOR089C</Hit_accession>
  <Hit_len>210</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>45.4394</Hsp_bit-score>
      <Hsp_score>106</Hsp_score>
      <Hsp_evalue>1.88901e-06</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>498</Hsp_query-to>
      <Hsp_hit-from>10</Hsp_hit-from>
      <Hsp_hit-to>164</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>42</Hsp_identity>
      <Hsp_positive>72</Hsp_positive>
      <Hsp_gaps>17</Hsp_gaps>
      <Hsp_align-len>169</Hsp_align-len>
      <Hsp_qseq>MVVLGASKVGKTALVSRFLLGRFEDAYTPTI-EDFHRKLYRIRGELYQLDILDTSGNHPFPAMRRLCLLTGDLFVVVFSLDSRASFEEAKQLRLQILETXXXXXXXXXXXXHDACRPLV--LCGNKGDRGDACXXXXXXXXXXXXXGDAAGSAYFEISAKRNTGVDEMF</Hsp_qseq>
      <Hsp_hseq>LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHE--------------QASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF</Hsp_hseq>
      <Hsp_midline>+V+LG + VGK+++V RF+   F +   PTI   F  +   I     + +I DT+G   F ++  +        +VV+ +    SF +A+    ++ E               A + ++  L GNK D      E      E     +  G  +FE SAK    V+++F</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>88</Statistics_hsp-len>
      <Statistics_eff-space>415321526</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
</Iteration>
<Iteration>
  <Iteration_iter-num>15</Iteration_iter-num>
  <Iteration_query-ID>Query_15</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053967-RA transcript Note:&quot;Similar to Tcf20 Transcription factor 20 (Mus musculus)&quot; offset:19 AED:0.19 eAED:0.19 QI:19|0.4|0.5|0.5|0.8|0.66|6|0|2117</Iteration_query-def>
  <Iteration_query-len>6373</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>105</Statistics_hsp-len>
      <Statistics_eff-space>4484334273</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>16</Iteration_iter-num>
  <Iteration_query-ID>Query_16</Iteration_query-ID>
  <Iteration_query-def>PMZ_0023160-RA transcript Note:&quot;Protein of unknown function&quot; offset:0 AED:0.51 eAED:1.00 QI:0|0|0|0.42|0|0|14|1572|262</Iteration_query-def>
  <Iteration_query-len>2361</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>97</Statistics_hsp-len>
      <Statistics_eff-space>1568968230</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>17</Iteration_iter-num>
  <Iteration_query-ID>Query_17</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053969-RA transcript Note:&quot;Similar to ZNF234 Zinc finger protein 234 (Homo sapiens)&quot; offset:0 AED:0.55 eAED:0.70 QI:0|0.66|0.57|0.85|0.66|0.71|7|0|519</Iteration_query-def>
  <Iteration_query-len>1560</Iteration_query-len>
<Iteration_hits>
<Hit>
  <Hit_num>1</Hit_num>
  <Hit_id>YGL035C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VII:431548:433062:-1 gene:YGL035C transcript:YGL035C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MIG1 description:Transcription factor involved in glucose repression; sequence specific DNA binding protein containing two Cys2His2 zinc finger motifs; regulated by the SNF1 kinase and the GLC7 phosphatase; regulates filamentous growth along with Mig2p in response to glucose depletion; activated in stochastic pulses of nuclear localization, shuttling between cytosol and nucleus depending on external glucose levels and its phosphorylation state [Source:SGD;Acc:S000003003]</Hit_def>
  <Hit_accession>YGL035C</Hit_accession>
  <Hit_len>504</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>62.7734</Hsp_bit-score>
      <Hsp_score>151</Hsp_score>
      <Hsp_evalue>4.92766e-11</Hsp_evalue>
      <Hsp_query-from>1366</Hsp_query-from>
      <Hsp_query-to>1527</Hsp_query-to>
      <Hsp_hit-from>38</Hsp_hit-from>
      <Hsp_hit-to>93</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>29</Hsp_identity>
      <Hsp_positive>37</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>56</Hsp_align-len>
      <Hsp_qseq>HACEVCGALFRKACEVTRHRRIHTGEKPFACE--KCGRRFTWSNSLARHRRIHRSA</Hsp_qseq>
      <Hsp_hseq>HACPICHRAFHRLEHQTRHMRIHTGEKPHACDFPGCVKRFSRSDELTRHRRIHTNS</Hsp_hseq>
      <Hsp_midline>HAC +C   F +    TRH RIHTGEKP AC+   C +RF+ S+ L RHRRIH ++</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>2</Hit_num>
  <Hit_id>YOR113W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XV:534075:536819:1 gene:YOR113W transcript:YOR113W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AZF1 description:Zinc-finger transcription factor; involved in diauxic shift; in the presence of glucose, activates transcription of genes involved in growth and carbon metabolism; in nonfermentable carbon sources, activates transcription of genes involved in maintenance of cell wall integrity; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000005639]</Hit_def>
  <Hit_accession>YOR113W</Hit_accession>
  <Hit_len>914</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>57.7658</Hsp_bit-score>
      <Hsp_score>138</Hsp_score>
      <Hsp_evalue>3.17517e-09</Hsp_evalue>
      <Hsp_query-from>1321</Hsp_query-from>
      <Hsp_query-to>1545</Hsp_query-to>
      <Hsp_hit-from>577</Hsp_hit-from>
      <Hsp_hit-to>652</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>28</Hsp_identity>
      <Hsp_positive>38</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>76</Hsp_align-len>
      <Hsp_qseq>GEQSPQGWMGDGKMR-HACEVCGALFRKACEVTRHRRIHTGEKPFACEKCGRRFTWSNSLARHRRIHRSAATYMDD</Hsp_qseq>
      <Hsp_hseq>GVEKPKGTQNTRAVKKHECPYCHRLFSQATHLEVHVRSHIGYKPFVCDYCGKRFTQGGNLRTHERLHTGEKPYSCD</Hsp_hseq>
      <Hsp_midline>G + P+G      ++ H C  C  LF +A  +  H R H G KPF C+ CG+RFT   +L  H R+H     Y  D</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>50.8322</Hsp_bit-score>
      <Hsp_score>120</Hsp_score>
      <Hsp_evalue>4.05342e-07</Hsp_evalue>
      <Hsp_query-from>1372</Hsp_query-from>
      <Hsp_query-to>1539</Hsp_query-to>
      <Hsp_hit-from>623</Hsp_hit-from>
      <Hsp_hit-to>678</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>19</Hsp_identity>
      <Hsp_positive>33</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>56</Hsp_align-len>
      <Hsp_qseq>CEVCGALFRKACEVTRHRRIHTGEKPFACEKCGRRFTWSNSLARHRRIHRSAATYM</Hsp_qseq>
      <Hsp_hseq>CDYCGKRFTQGGNLRTHERLHTGEKPYSCDICDKKFSRKGNLAAHLVTHQKLKPFV</Hsp_hseq>
      <Hsp_midline>C+ CG  F +   +  H R+HTGEKP++C+ C ++F+   +LA H   H+    ++</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>3</Hit_num>
  <Hit_id>YNL027W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIV:579580:581616:1 gene:YNL027W transcript:YNL027W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CRZ1 description:Transcription factor, activates transcription of stress response genes; nuclear localization is positively regulated by calcineurin-mediated dephosphorylation; rapidly localizes to the nucleus under blue light stress; can be activated in stochastic pulses of nuclear localization in response to calcium [Source:SGD;Acc:S000004972]</Hit_def>
  <Hit_accession>YNL027W</Hit_accession>
  <Hit_len>678</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>52.7582</Hsp_bit-score>
      <Hsp_score>125</Hsp_score>
      <Hsp_evalue>1.01787e-07</Hsp_evalue>
      <Hsp_query-from>1369</Hsp_query-from>
      <Hsp_query-to>1539</Hsp_query-to>
      <Hsp_hit-from>570</Hsp_hit-from>
      <Hsp_hit-to>626</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>21</Hsp_identity>
      <Hsp_positive>29</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>57</Hsp_align-len>
      <Hsp_qseq>ACEVCGALFRKACEVTRHRRIHTGEKPFACEKCGRRFTWSNSLARHRRIHRSAATYM</Hsp_qseq>
      <Hsp_hseq>ACDVCGKKFTRPYNLKSHLRTHTNERPFICSICGKAFARQHDRKRHEDLHTGKKRYV</Hsp_hseq>
      <Hsp_midline>AC+VCG  F +   +  H R HT E+PF C  CG+ F   +   RH  +H     Y+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>4</Hit_num>
  <Hit_id>YMR037C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIII:344403:346517:-1 gene:YMR037C transcript:YMR037C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MSN2 description:Stress-responsive transcriptional activator; activated in stochastic pulses of nuclear localization in response to various stress conditions; binds DNA at stress response elements of responsive genes; relative distribution to nucleus increases upon DNA replication stress [Source:SGD;Acc:S000004640]</Hit_def>
  <Hit_accession>YMR037C</Hit_accession>
  <Hit_len>704</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>52.373</Hsp_bit-score>
      <Hsp_score>124</Hsp_score>
      <Hsp_evalue>1.27111e-07</Hsp_evalue>
      <Hsp_query-from>1372</Hsp_query-from>
      <Hsp_query-to>1521</Hsp_query-to>
      <Hsp_hit-from>649</Hsp_hit-from>
      <Hsp_hit-to>699</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>18</Hsp_identity>
      <Hsp_positive>35</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>51</Hsp_align-len>
      <Hsp_qseq>CEVCGALFRKACEVTRH-RRIHTGEKPFACEKCGRRFTWSNSLARHRRIHR</Hsp_qseq>
      <Hsp_hseq>CHICPKSFKRSEHLKRHVRSVHSNERPFACHICDKKFSRSDNLSQHIKTHK</Hsp_hseq>
      <Hsp_midline>C +C   F+++  + RH R +H+ E+PFAC  C ++F+ S++L++H + H+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>5</Hit_num>
  <Hit_id>YDR216W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:IV:895035:899006:1 gene:YDR216W transcript:YDR216W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ADR1 description:Carbon source-responsive zinc-finger transcription factor; required for transcription of the glucose-repressed gene ADH2, of peroxisomal protein genes, and of genes required for ethanol, glycerol, and fatty acid utilization [Source:SGD;Acc:S000002624]</Hit_def>
  <Hit_accession>YDR216W</Hit_accession>
  <Hit_len>1323</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>52.373</Hsp_bit-score>
      <Hsp_score>124</Hsp_score>
      <Hsp_evalue>1.52404e-07</Hsp_evalue>
      <Hsp_query-from>1354</Hsp_query-from>
      <Hsp_query-to>1518</Hsp_query-to>
      <Hsp_hit-from>99</Hsp_hit-from>
      <Hsp_hit-to>155</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>26</Hsp_identity>
      <Hsp_positive>33</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>57</Hsp_align-len>
      <Hsp_qseq>GKMRH-ACEVCGALFRKACEVTRHRRIHTGEKPFACEKCGRRFTWSNSLARH-RRIH</Hsp_qseq>
      <Hsp_hseq>GKLRSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRCFTRRDLLIRHAQKIH</Hsp_hseq>
      <Hsp_midline>GK+R   CEVC   F +   + RH R HT EKP+ C  C R FT  + L RH ++IH</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>6</Hit_num>
  <Hit_id>YBR066C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:II:370037:370699:-1 gene:YBR066C transcript:YBR066C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NRG2 description:Transcriptional repressor; mediates glucose repression and negatively regulates filamentous growth; activated in stochastic pulses of nuclear localization in response to low glucose [Source:SGD;Acc:S000000270]</Hit_def>
  <Hit_accession>YBR066C</Hit_accession>
  <Hit_len>220</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>49.2914</Hsp_bit-score>
      <Hsp_score>116</Hsp_score>
      <Hsp_evalue>3.37903e-07</Hsp_evalue>
      <Hsp_query-from>1357</Hsp_query-from>
      <Hsp_query-to>1518</Hsp_query-to>
      <Hsp_hit-from>150</Hsp_hit-from>
      <Hsp_hit-to>205</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>23</Hsp_identity>
      <Hsp_positive>34</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>56</Hsp_align-len>
      <Hsp_qseq>KMRHACEVCGALFRKACEVTRHRRIHTGEKPFAC--EKCGRRFTWSNSLARHRRIH</Hsp_qseq>
      <Hsp_hseq>RTRHFCKICSTGFTTSGHLSRHNRIHTGEKNHICPHEGCGQRFSRHDNCNQHYRTH</Hsp_hseq>
      <Hsp_midline>+ RH C++C   F  +  ++RH RIHTGEK   C  E CG+RF+  ++  +H R H</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>7</Hit_num>
  <Hit_id>YJL056C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:X:330431:333073:-1 gene:YJL056C transcript:YJL056C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZAP1 description:Zinc-regulated transcription factor; binds to zinc-responsive promoters to induce transcription of certain genes in presence of zinc, represses other genes in low zinc; regulates its own transcription; contains seven zinc-finger domains [Source:SGD;Acc:S000003592]</Hit_def>
  <Hit_accession>YJL056C</Hit_accession>
  <Hit_len>880</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>50.8322</Hsp_bit-score>
      <Hsp_score>120</Hsp_score>
      <Hsp_evalue>3.84387e-07</Hsp_evalue>
      <Hsp_query-from>1354</Hsp_query-from>
      <Hsp_query-to>1521</Hsp_query-to>
      <Hsp_hit-from>792</Hsp_hit-from>
      <Hsp_hit-to>847</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>21</Hsp_identity>
      <Hsp_positive>34</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>56</Hsp_align-len>
      <Hsp_qseq>GKMRHACEVCGALFRKACEVTRHRRIHTGEKPFACEKCGRRFTWSNSLARHRRIHR</Hsp_qseq>
      <Hsp_hseq>GEKPYKCHICNKKFAISSSLKIHIRTHTGEKPLQCKICGKRFNESSNLSKHIKTHQ</Hsp_hseq>
      <Hsp_midline>G+  + C +C   F  +  +  H R HTGEKP  C+ CG+RF  S++L++H + H+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>8</Hit_num>
  <Hit_id>YKL062W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XI:323228:325120:1 gene:YKL062W transcript:YKL062W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MSN4 description:Stress-responsive transcriptional activator; activated in stochastic pulses of nuclear localization in response to various stress conditions; binds DNA at stress response elements of responsive genes, inducing gene expression; involved in diauxic shift [Source:SGD;Acc:S000001545]</Hit_def>
  <Hit_accession>YKL062W</Hit_accession>
  <Hit_len>630</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>50.0618</Hsp_bit-score>
      <Hsp_score>118</Hsp_score>
      <Hsp_evalue>6.73127e-07</Hsp_evalue>
      <Hsp_query-from>1372</Hsp_query-from>
      <Hsp_query-to>1521</Hsp_query-to>
      <Hsp_hit-from>575</Hsp_hit-from>
      <Hsp_hit-to>625</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>19</Hsp_identity>
      <Hsp_positive>35</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>51</Hsp_align-len>
      <Hsp_qseq>CEVCGALFRKACEVTRH-RRIHTGEKPFACEKCGRRFTWSNSLARHRRIHR</Hsp_qseq>
      <Hsp_hseq>CKDCEKAFRRSEHLKRHIRSVHSTERPFACMFCEKKFSRSDNLSQHLKTHK</Hsp_hseq>
      <Hsp_midline>C+ C   FR++  + RH R +H+ E+PFAC  C ++F+ S++L++H + H+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>9</Hit_num>
  <Hit_id>YPR015C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XVI:590283:591026:-1 gene:YPR015C transcript:YPR015C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative zinc finger transcription factor; binds DNA in sequence-specific manner; overexpression causes a cell cycle delay or arrest [Source:SGD;Acc:S000006219]</Hit_def>
  <Hit_accession>YPR015C</Hit_accession>
  <Hit_len>247</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>47.7506</Hsp_bit-score>
      <Hsp_score>112</Hsp_score>
      <Hsp_evalue>1.26095e-06</Hsp_evalue>
      <Hsp_query-from>1357</Hsp_query-from>
      <Hsp_query-to>1521</Hsp_query-to>
      <Hsp_hit-from>182</Hsp_hit-from>
      <Hsp_hit-to>238</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>20</Hsp_identity>
      <Hsp_positive>31</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>57</Hsp_align-len>
      <Hsp_qseq>KMRHACEVCGALFRKACEVTRHRRIHTGEKPFAC--EKCGRRFTWSNSLARHRRIHR</Hsp_qseq>
      <Hsp_hseq>KLRKQCPICGKVCSRPSTLRTHYLIHTGDTPFKCTWEHCNKSFNVKSNMLRHLRTHQ</Hsp_hseq>
      <Hsp_midline>K+R  C +CG +  +   +  H  IHTG+ PF C  E C + F   +++ RH R H+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>10</Hit_num>
  <Hit_id>YPR013C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XVI:584632:585585:-1 gene:YPR013C transcript:YPR013C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CMR3 description:Putative zinc finger protein; YPR013C is not an essential gene [Source:SGD;Acc:S000006217]</Hit_def>
  <Hit_accession>YPR013C</Hit_accession>
  <Hit_len>317</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>48.521</Hsp_bit-score>
      <Hsp_score>114</Hsp_score>
      <Hsp_evalue>1.3304e-06</Hsp_evalue>
      <Hsp_query-from>1345</Hsp_query-from>
      <Hsp_query-to>1518</Hsp_query-to>
      <Hsp_hit-from>247</Hsp_hit-from>
      <Hsp_hit-to>306</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>20</Hsp_identity>
      <Hsp_positive>31</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>60</Hsp_align-len>
      <Hsp_qseq>MGDGKMRHACEVCGALFRKACEVTRHRRIHTGEKPFAC--EKCGRRFTWSNSLARHRRIH</Hsp_qseq>
      <Hsp_hseq>ISSTKLRKQCPVCGKICSRPSTLKTHYLIHTGDTPFKCTWEGCTKSFNVKSNMLRHLKSH</Hsp_hseq>
      <Hsp_midline>+   K+R  C VCG +  +   +  H  IHTG+ PF C  E C + F   +++ RH + H</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>11</Hit_num>
  <Hit_id>YGR067C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VII:622372:624786:-1 gene:YGR067C transcript:YGR067C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative protein of unknown function; contains a zinc finger motif similar to that of Adr1p [Source:SGD;Acc:S000003299]</Hit_def>
  <Hit_accession>YGR067C</Hit_accession>
  <Hit_len>804</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>48.9062</Hsp_bit-score>
      <Hsp_score>115</Hsp_score>
      <Hsp_evalue>1.38679e-06</Hsp_evalue>
      <Hsp_query-from>1345</Hsp_query-from>
      <Hsp_query-to>1557</Hsp_query-to>
      <Hsp_hit-from>1</Hsp_hit-from>
      <Hsp_hit-to>78</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>27</Hsp_identity>
      <Hsp_positive>38</Hsp_positive>
      <Hsp_gaps>7</Hsp_gaps>
      <Hsp_align-len>78</Hsp_align-len>
      <Hsp_qseq>MGDGKMRHACEVCGALFRKACEVTRHRRIHTGEKPFACEKCGRRFTWSNSLARH-RRIHRS------AATYMDDADLP</Hsp_qseq>
      <Hsp_hseq>MAAGQKKYICSFCLKPFSRSEHKIRHERSHAGVKPFQCQVCKHSFVRRDLLQRHIRTVHRTFLLSSYASMTGDKADIP</Hsp_hseq>
      <Hsp_midline>M  G+ ++ C  C   F ++    RH R H G KPF C+ C   F   + L RH R +HR+      A+   D AD+P</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>12</Hit_num>
  <Hit_id>YER130C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:V:421115:422446:-1 gene:YER130C transcript:YER130C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:COM2 description:Transcription factor that binds IME1 Upstream Activation Signal (UAS)ru; COM2 transcription is regulated by Haa1p, Sok2p and Zap1p transcriptional activators; may bind the IME1 promoter under all growth conditions to negatively regulate its transcription in the absence of a positive regulator that binds more effectively; repressor activity may depend on phosphorylation by PKA; C. albicans homolog (MNL1) plays a role in adaptation to stress [Source:SGD;Acc:S000000932]</Hit_def>
  <Hit_accession>YER130C</Hit_accession>
  <Hit_len>443</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>47.3654</Hsp_bit-score>
      <Hsp_score>111</Hsp_score>
      <Hsp_evalue>3.65895e-06</Hsp_evalue>
      <Hsp_query-from>1339</Hsp_query-from>
      <Hsp_query-to>1527</Hsp_query-to>
      <Hsp_hit-from>380</Hsp_hit-from>
      <Hsp_hit-to>443</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>21</Hsp_identity>
      <Hsp_positive>33</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>64</Hsp_align-len>
      <Hsp_qseq>GWMGDGKMRHACEVCGALFRKACEVTRH-RRIHTGEKPFACEKCGRRFTWSNSLARHRRIHRSA</Hsp_qseq>
      <Hsp_hseq>SLIPDASKQFGCEFCDRRFKRQEHLKRHVRSLHMCEKPFTCHICNKNFSRSDNLNQHVKTHASL</Hsp_hseq>
      <Hsp_midline>  + D   +  CE C   F++   + RH R +H  EKPF C  C + F+ S++L +H + H S </Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>13</Hit_num>
  <Hit_id>YML081W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIII:104777:108532:1 gene:YML081W transcript:YML081W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TDA9 description:Transcription factor that regulates acetate production; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; null mutant is sensitive to expression of the top1-T722A allele; not an essential gene; TDA9 has a paralog, RSF2, that arose from the whole genome duplication [Source:SGD;Acc:S000004546]</Hit_def>
  <Hit_accession>YML081W</Hit_accession>
  <Hit_len>1251</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>46.9802</Hsp_bit-score>
      <Hsp_score>110</Hsp_score>
      <Hsp_evalue>6.13412e-06</Hsp_evalue>
      <Hsp_query-from>1372</Hsp_query-from>
      <Hsp_query-to>1527</Hsp_query-to>
      <Hsp_hit-from>63</Hsp_hit-from>
      <Hsp_hit-to>114</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>21</Hsp_identity>
      <Hsp_positive>28</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>52</Hsp_align-len>
      <Hsp_qseq>CEVCGALFRKACEVTRHRRIHTGEKPFACEKCGRRFTWSNSLARHRRIHRSA</Hsp_qseq>
      <Hsp_hseq>CHICTRGFVRQEHLKRHQRAHTNEKPFLCVFCGRCFARRDLVLRHQHKLHSA</Hsp_hseq>
      <Hsp_midline>C +C   F +   + RH+R HT EKPF C  CGR F   + + RH+    SA</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>14</Hit_num>
  <Hit_id>YDR096W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:IV:637139:639823:1 gene:YDR096W transcript:YDR096W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GIS1 description:Histone demethylase and transcription factor; regulates genes during nutrient limitation; activity modulated by proteasome-mediated proteolysis; has JmjC and JmjN domain in N-terminus that interact, promoting stability and proper transcriptional activity; contains two transactivating domains downstream of Jmj domains and a C-terminal DNA binding domain; relocalizes to the cytosol in response to hypoxia; GIS1 has a paralog, RPH1, that arose from the whole genome duplication [Source:SGD;Acc:S000002503]</Hit_def>
  <Hit_accession>YDR096W</Hit_accession>
  <Hit_len>894</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>46.9802</Hsp_bit-score>
      <Hsp_score>110</Hsp_score>
      <Hsp_evalue>6.59155e-06</Hsp_evalue>
      <Hsp_query-from>1345</Hsp_query-from>
      <Hsp_query-to>1506</Hsp_query-to>
      <Hsp_hit-from>821</Hsp_hit-from>
      <Hsp_hit-to>875</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>19</Hsp_identity>
      <Hsp_positive>31</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>55</Hsp_align-len>
      <Hsp_qseq>MGDGKMRHACEVCGALFRKACEVTRHRR-IHTGEKPFACEKCGRRFTWSNSLARH</Hsp_qseq>
      <Hsp_hseq>MSDHGKIYICRECNRQFSSGHHLTRHKKSVHSGEKPHSCPRCGKRFKRRDHVLQH</Hsp_hseq>
      <Hsp_midline>M D    + C  C   F     +TRH++ +H+GEKP +C +CG+RF   + + +H</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>94</Statistics_hsp-len>
      <Statistics_eff-space>977102142</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
</Iteration>
<Iteration>
  <Iteration_iter-num>18</Iteration_iter-num>
  <Iteration_query-ID>Query_18</Iteration_query-ID>
  <Iteration_query-def>PMZ_0042669-RA transcript Note:&quot;Similar to ZNF479 Zinc finger protein 479 (Homo sapiens)&quot; offset:0 AED:0.45 eAED:1.00 QI:0|-1|0|1|-1|1|1|0|177</Iteration_query-def>
  <Iteration_query-len>534</Iteration_query-len>
<Iteration_hits>
<Hit>
  <Hit_num>1</Hit_num>
  <Hit_id>YOR113W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XV:534075:536819:1 gene:YOR113W transcript:YOR113W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AZF1 description:Zinc-finger transcription factor; involved in diauxic shift; in the presence of glucose, activates transcription of genes involved in growth and carbon metabolism; in nonfermentable carbon sources, activates transcription of genes involved in maintenance of cell wall integrity; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000005639]</Hit_def>
  <Hit_accession>YOR113W</Hit_accession>
  <Hit_len>914</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>83.1889</Hsp_bit-score>
      <Hsp_score>204</Hsp_score>
      <Hsp_evalue>1.78885e-19</Hsp_evalue>
      <Hsp_query-from>292</Hsp_query-from>
      <Hsp_query-to>525</Hsp_query-to>
      <Hsp_hit-from>595</Hsp_hit-from>
      <Hsp_hit-to>672</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>34</Hsp_identity>
      <Hsp_positive>49</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>78</Hsp_align-len>
      <Hsp_qseq>CDHCGRLFMHKRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHRRSFQ</Hsp_qseq>
      <Hsp_hseq>CPYCHRLFSQATHLEVHVRSHIGYKPFVCDYCGKRFTQGGNLRTHERLHTGEKPYSCDICDKKFSRKGNLAAHLVTHQ</Hsp_hseq>
      <Hsp_midline>C +C RLF     L +HVR+H G +P+ CD+C +RF +  NL  H R+HTGE+P+ C+ C K+FS   +L  H  + Q</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>78.5666</Hsp_bit-score>
      <Hsp_score>192</Hsp_score>
      <Hsp_evalue>7.17082e-18</Hsp_evalue>
      <Hsp_query-from>283</Hsp_query-from>
      <Hsp_query-to>525</Hsp_query-to>
      <Hsp_hit-from>620</Hsp_hit-from>
      <Hsp_hit-to>702</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>36</Hsp_identity>
      <Hsp_positive>48</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>83</Hsp_align-len>
      <Hsp_qseq>PFRCDHCGRLFMHKRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGC--ERCGKRFSCSHHLTQHRRSFQ</Hsp_qseq>
      <Hsp_hseq>PFVCDYCGKRFTQGGNLRTHERLHTGEKPYSCDICDKKFSRKGNLAAHLVTHQKLKPFVCKLENCNKTFTQLGNMKAHQNRFH</Hsp_hseq>
      <Hsp_midline>PF CD+CG+ F    +LR H R HTGE+PY+CD CD++F R  NL  H   H   +PF C  E C K F+   ++  H+  F </Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>3</Hsp_num>
      <Hsp_bit-score>45.8246</Hsp_bit-score>
      <Hsp_score>107</Hsp_score>
      <Hsp_evalue>1.03403e-06</Hsp_evalue>
      <Hsp_query-from>346</Hsp_query-from>
      <Hsp_query-to>516</Hsp_query-to>
      <Hsp_hit-from>585</Hsp_hit-from>
      <Hsp_hit-to>641</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>20</Hsp_identity>
      <Hsp_positive>32</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>57</Hsp_align-len>
      <Hsp_qseq>RNHTGERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHRR</Hsp_qseq>
      <Hsp_hseq>QNTRAVKKHECPYCHRLFSQATHLEVHVRSHIGYKPFVCDYCGKRFTQGGNLRTHER</Hsp_hseq>
      <Hsp_midline>+N    + + C +C + F ++ +L  H R H G +PF C+ CGKRF+   +L  H R</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>2</Hit_num>
  <Hit_id>YJL056C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:X:330431:333073:-1 gene:YJL056C transcript:YJL056C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZAP1 description:Zinc-regulated transcription factor; binds to zinc-responsive promoters to induce transcription of certain genes in presence of zinc, represses other genes in low zinc; regulates its own transcription; contains seven zinc-finger domains [Source:SGD;Acc:S000003592]</Hit_def>
  <Hit_accession>YJL056C</Hit_accession>
  <Hit_len>880</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>82.0333</Hsp_bit-score>
      <Hsp_score>201</Hsp_score>
      <Hsp_evalue>4.06775e-19</Hsp_evalue>
      <Hsp_query-from>283</Hsp_query-from>
      <Hsp_query-to>525</Hsp_query-to>
      <Hsp_hit-from>767</Hsp_hit-from>
      <Hsp_hit-to>847</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>35</Hsp_identity>
      <Hsp_positive>53</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>81</Hsp_align-len>
      <Hsp_qseq>PFRCDHCGRLFMHKRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHRRSFQ</Hsp_qseq>
      <Hsp_hseq>PYKCKTCKRCFSSEETLVQHTRTHSGEKPYKCHICNKKFAISSSLKIHIRTHTGEKPLQCKICGKRFNESSNLSKHIKTHQ</Hsp_hseq>
      <Hsp_midline>P++C  C R F  + +L  H R H+GE+PY C  C+++F  S +L  H R HTGE+P  C+ CGKRF+ S +L++H ++ Q</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>58.9214</Hsp_bit-score>
      <Hsp_score>141</Hsp_score>
      <Hsp_evalue>3.58291e-11</Hsp_evalue>
      <Hsp_query-from>301</Hsp_query-from>
      <Hsp_query-to>519</Hsp_query-to>
      <Hsp_hit-from>745</Hsp_hit-from>
      <Hsp_hit-to>817</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>26</Hsp_identity>
      <Hsp_positive>41</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>73</Hsp_align-len>
      <Hsp_qseq>CGRLFMHKRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHRRS</Hsp_qseq>
      <Hsp_hseq>CHRTFPQRQKLIRHLKVHSKYKPYKCKTCKRCFSSEETLVQHTRTHSGEKPYKCHICNKKFAISSSLKIHIRT</Hsp_hseq>
      <Hsp_midline>C R F  ++ L  H++ H+  +PY C  C + F   + L +H R H+GE+P+ C  C K+F+ S  L  H R+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>3</Hit_num>
  <Hit_id>YNL027W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIV:579580:581616:1 gene:YNL027W transcript:YNL027W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CRZ1 description:Transcription factor, activates transcription of stress response genes; nuclear localization is positively regulated by calcineurin-mediated dephosphorylation; rapidly localizes to the nucleus under blue light stress; can be activated in stochastic pulses of nuclear localization in response to calcium [Source:SGD;Acc:S000004972]</Hit_def>
  <Hit_accession>YNL027W</Hit_accession>
  <Hit_len>678</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>67.0106</Hsp_bit-score>
      <Hsp_score>162</Hsp_score>
      <Hsp_evalue>5.44827e-14</Hsp_evalue>
      <Hsp_query-from>280</Hsp_query-from>
      <Hsp_query-to>519</Hsp_query-to>
      <Hsp_hit-from>567</Hsp_hit-from>
      <Hsp_hit-to>655</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>32</Hsp_identity>
      <Hsp_positive>48</Hsp_positive>
      <Hsp_gaps>9</Hsp_gaps>
      <Hsp_align-len>89</Hsp_align-len>
      <Hsp_qseq>APFRCDHCGRLFMHKRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCE---------RCGKRFSCSHHLTQHRRS</Hsp_qseq>
      <Hsp_hseq>ANFACDVCGKKFTRPYNLKSHLRTHTNERPFICSICGKAFARQHDRKRHEDLHTGKKRYVCGGKLKDGKPWGCGKKFARSDALGRHFKT</Hsp_hseq>
      <Hsp_midline>A F CD CG+ F    +L+ H+R HT ERP+ C  C + F R  +  RH  +HTG++ + C           CGK+F+ S  L +H ++</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>4</Hit_num>
  <Hit_id>YGL035C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VII:431548:433062:-1 gene:YGL035C transcript:YGL035C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MIG1 description:Transcription factor involved in glucose repression; sequence specific DNA binding protein containing two Cys2His2 zinc finger motifs; regulated by the SNF1 kinase and the GLC7 phosphatase; regulates filamentous growth along with Mig2p in response to glucose depletion; activated in stochastic pulses of nuclear localization, shuttling between cytosol and nucleus depending on external glucose levels and its phosphorylation state [Source:SGD;Acc:S000003003]</Hit_def>
  <Hit_accession>YGL035C</Hit_accession>
  <Hit_len>504</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>64.3142</Hsp_bit-score>
      <Hsp_score>155</Hsp_score>
      <Hsp_evalue>5.39457e-13</Hsp_evalue>
      <Hsp_query-from>283</Hsp_query-from>
      <Hsp_query-to>459</Hsp_query-to>
      <Hsp_hit-from>37</Hsp_hit-from>
      <Hsp_hit-to>97</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>33</Hsp_identity>
      <Hsp_positive>37</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>61</Hsp_align-len>
      <Hsp_qseq>PFRCDHCGRLFMHKRSLRIHVRNHTGERPYACDF--CDQRFLRSDNLTRHRRIHTGERPFG</Hsp_qseq>
      <Hsp_hseq>PHACPICHRAFHRLEHQTRHMRIHTGEKPHACDFPGCVKRFSRSDELTRHRRIHTNSHPRG</Hsp_hseq>
      <Hsp_midline>P  C  C R F        H+R HTGE+P+ACDF  C +RF RSD LTRHRRIHT   P G</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>58.9214</Hsp_bit-score>
      <Hsp_score>141</Hsp_score>
      <Hsp_evalue>3.66675e-11</Hsp_evalue>
      <Hsp_query-from>304</Hsp_query-from>
      <Hsp_query-to>516</Hsp_query-to>
      <Hsp_hit-from>16</Hsp_hit-from>
      <Hsp_hit-to>88</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>32</Hsp_identity>
      <Hsp_positive>40</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>73</Hsp_align-len>
      <Hsp_qseq>GRLFMHKRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCE--RCGKRFSCSHHLTQHRR</Hsp_qseq>
      <Hsp_hseq>GSLLKESKSKSKVAAKSEAPRPHACPICHRAFHRLEHQTRHMRIHTGEKPHACDFPGCVKRFSRSDELTRHRR</Hsp_hseq>
      <Hsp_midline>G L    +S           RP+AC  C + F R ++ TRH RIHTGE+P  C+   C KRFS S  LT+HRR</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>5</Hit_num>
  <Hit_id>YGL209W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VII:95858:97006:1 gene:YGL209W transcript:YGL209W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MIG2 description:Zinc finger transcriptional repressor; cooperates with Mig1p in glucose-induced gene repression; under low glucose conditions relocalizes to mitochondrion, where it interacts with Ups1p, antagonizes mitochondrial fission factor Dnm1p, indicative of a role in mitochondrial fusion or regulating morphology; regulates filamentous growth in response to glucose depletion; activated in stochastic pulses of nuclear localization in response to low glucose [Source:SGD;Acc:S000003177]</Hit_def>
  <Hit_accession>YGL209W</Hit_accession>
  <Hit_len>382</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>62.7734</Hsp_bit-score>
      <Hsp_score>151</Hsp_score>
      <Hsp_evalue>1.34901e-12</Hsp_evalue>
      <Hsp_query-from>268</Hsp_query-from>
      <Hsp_query-to>447</Hsp_query-to>
      <Hsp_hit-from>11</Hsp_hit-from>
      <Hsp_hit-to>72</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>31</Hsp_identity>
      <Hsp_positive>37</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>62</Hsp_align-len>
      <Hsp_qseq>DGLNAPFRCDHCGRLFMHKRSLRIHVRNHTGERPYACDF--CDQRFLRSDNLTRHRRIHTGE</Hsp_qseq>
      <Hsp_hseq>DNENRPFRCDTCHRGFHRLEHKKRHLRTHTGEKPHHCAFPGCGKSFSRSDELKRHMRTHTGQ</Hsp_hseq>
      <Hsp_midline>D  N PFRCD C R F      + H+R HTGE+P+ C F  C + F RSD L RH R HTG+</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>47.3654</Hsp_bit-score>
      <Hsp_score>111</Hsp_score>
      <Hsp_evalue>2.46663e-07</Hsp_evalue>
      <Hsp_query-from>364</Hsp_query-from>
      <Hsp_query-to>519</Hsp_query-to>
      <Hsp_hit-from>15</Hsp_hit-from>
      <Hsp_hit-to>68</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>25</Hsp_identity>
      <Hsp_positive>32</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>54</Hsp_align-len>
      <Hsp_qseq>RPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCE--RCGKRFSCSHHLTQHRRS</Hsp_qseq>
      <Hsp_hseq>RPFRCDTCHRGFHRLEHKKRHLRTHTGEKPHHCAFPGCGKSFSRSDELKRHMRT</Hsp_hseq>
      <Hsp_midline>RP+ CD C + F R ++  RH R HTGE+P  C    CGK FS S  L +H R+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>6</Hit_num>
  <Hit_id>YKL062W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XI:323228:325120:1 gene:YKL062W transcript:YKL062W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MSN4 description:Stress-responsive transcriptional activator; activated in stochastic pulses of nuclear localization in response to various stress conditions; binds DNA at stress response elements of responsive genes, inducing gene expression; involved in diauxic shift [Source:SGD;Acc:S000001545]</Hit_def>
  <Hit_accession>YKL062W</Hit_accession>
  <Hit_len>630</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>62.3882</Hsp_bit-score>
      <Hsp_score>150</Hsp_score>
      <Hsp_evalue>2.12882e-12</Hsp_evalue>
      <Hsp_query-from>253</Hsp_query-from>
      <Hsp_query-to>438</Hsp_query-to>
      <Hsp_hit-from>562</Hsp_hit-from>
      <Hsp_hit-to>624</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>26</Hsp_identity>
      <Hsp_positive>40</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>63</Hsp_align-len>
      <Hsp_qseq>VPPTEDGLNAPFRCDHCGRLFMHKRSLRIHVRN-HTGERPYACDFCDQRFLRSDNLTRHRRIH</Hsp_qseq>
      <Hsp_hseq>IDPNNYDKNKPFKCKDCEKAFRRSEHLKRHIRSVHSTERPFACMFCEKKFSRSDNLSQHLKTH</Hsp_hseq>
      <Hsp_midline>+ P     N PF+C  C + F     L+ H+R+ H+ ERP+AC FC+++F RSDNL++H + H</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>57.7658</Hsp_bit-score>
      <Hsp_score>138</Hsp_score>
      <Hsp_evalue>8.93928e-11</Hsp_evalue>
      <Hsp_query-from>337</Hsp_query-from>
      <Hsp_query-to>531</Hsp_query-to>
      <Hsp_hit-from>562</Hsp_hit-from>
      <Hsp_hit-to>627</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>26</Hsp_identity>
      <Hsp_positive>42</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>66</Hsp_align-len>
      <Hsp_qseq>IHVRNHTGERPYACDFCDQRFLRSDNLTRH-RRIHTGERPFGCERCGKRFSCSHHLTQHRRSFQHY</Hsp_qseq>
      <Hsp_hseq>IDPNNYDKNKPFKCKDCEKAFRRSEHLKRHIRSVHSTERPFACMFCEKKFSRSDNLSQHLKTHKKH</Hsp_hseq>
      <Hsp_midline>I   N+   +P+ C  C++ F RS++L RH R +H+ ERPF C  C K+FS S +L+QH ++ + +</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>7</Hit_num>
  <Hit_id>YMR037C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIII:344403:346517:-1 gene:YMR037C transcript:YMR037C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MSN2 description:Stress-responsive transcriptional activator; activated in stochastic pulses of nuclear localization in response to various stress conditions; binds DNA at stress response elements of responsive genes; relative distribution to nucleus increases upon DNA replication stress [Source:SGD;Acc:S000004640]</Hit_def>
  <Hit_accession>YMR037C</Hit_accession>
  <Hit_len>704</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>58.9214</Hsp_bit-score>
      <Hsp_score>141</Hsp_score>
      <Hsp_evalue>3.52408e-11</Hsp_evalue>
      <Hsp_query-from>322</Hsp_query-from>
      <Hsp_query-to>531</Hsp_query-to>
      <Hsp_hit-from>631</Hsp_hit-from>
      <Hsp_hit-to>701</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>27</Hsp_identity>
      <Hsp_positive>43</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>71</Hsp_align-len>
      <Hsp_qseq>KRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRH-RRIHTGERPFGCERCGKRFSCSHHLTQHRRSFQHY</Hsp_qseq>
      <Hsp_hseq>RSSVVIESTKELEEKPFHCHICPKSFKRSEHLKRHVRSVHSNERPFACHICDKKFSRSDNLSQHIKTHKKH</Hsp_hseq>
      <Hsp_midline>+ S+ I       E+P+ C  C + F RS++L RH R +H+ ERPF C  C K+FS S +L+QH ++ + +</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>58.151</Hsp_bit-score>
      <Hsp_score>139</Hsp_score>
      <Hsp_evalue>6.86384e-11</Hsp_evalue>
      <Hsp_query-from>283</Hsp_query-from>
      <Hsp_query-to>438</Hsp_query-to>
      <Hsp_hit-from>646</Hsp_hit-from>
      <Hsp_hit-to>698</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>25</Hsp_identity>
      <Hsp_positive>35</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>53</Hsp_align-len>
      <Hsp_qseq>PFRCDHCGRLFMHKRSLRIHVRN-HTGERPYACDFCDQRFLRSDNLTRHRRIH</Hsp_qseq>
      <Hsp_hseq>PFHCHICPKSFKRSEHLKRHVRSVHSNERPFACHICDKKFSRSDNLSQHIKTH</Hsp_hseq>
      <Hsp_midline>PF C  C + F     L+ HVR+ H+ ERP+AC  CD++F RSDNL++H + H</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>8</Hit_num>
  <Hit_id>YDR146C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:IV:748613:750742:-1 gene:YDR146C transcript:YDR146C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SWI5 description:Transcription factor that recruits Mediator and Swi/Snf complexes; activates transcription of genes expressed at the M/G1 phase boundary and in G1 phase; required for expression of the HO gene controlling mating type switching; localization to nucleus occurs during G1 and appears to be regulated by phosphorylation by Cdc28p kinase; SWI5 has a paralog, ACE2, that arose from the whole genome duplication [Source:SGD;Acc:S000002553]</Hit_def>
  <Hit_accession>YDR146C</Hit_accession>
  <Hit_len>709</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>58.151</Hsp_bit-score>
      <Hsp_score>139</Hsp_score>
      <Hsp_evalue>6.36855e-11</Hsp_evalue>
      <Hsp_query-from>301</Hsp_query-from>
      <Hsp_query-to>513</Hsp_query-to>
      <Hsp_hit-from>557</Hsp_hit-from>
      <Hsp_hit-to>627</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>27</Hsp_identity>
      <Hsp_positive>45</Hsp_positive>
      <Hsp_gaps>4</Hsp_gaps>
      <Hsp_align-len>73</Hsp_align-len>
      <Hsp_qseq>CGRLFMHKRSLRIHVRNHTGERPYACDF--CDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHR</Hsp_qseq>
      <Hsp_hseq>CTKTFKRRYNIRSHIQTHLEDRPYSCDHPGCDKAFVRNHDLIRHKKSHQ-EKAYACP-CGKKFNREDALVVHR</Hsp_hseq>
      <Hsp_midline>C + F  + ++R H++ H  +RPY+CD   CD+ F+R+ +L RH++ H  E+ + C  CGK+F+    L  HR</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>9</Hit_num>
  <Hit_id>YDR216W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:IV:895035:899006:1 gene:YDR216W transcript:YDR216W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ADR1 description:Carbon source-responsive zinc-finger transcription factor; required for transcription of the glucose-repressed gene ADH2, of peroxisomal protein genes, and of genes required for ethanol, glycerol, and fatty acid utilization [Source:SGD;Acc:S000002624]</Hit_def>
  <Hit_accession>YDR216W</Hit_accession>
  <Hit_len>1323</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>56.9954</Hsp_bit-score>
      <Hsp_score>136</Hsp_score>
      <Hsp_evalue>1.98278e-10</Hsp_evalue>
      <Hsp_query-from>262</Hsp_query-from>
      <Hsp_query-to>444</Hsp_query-to>
      <Hsp_hit-from>96</Hsp_hit-from>
      <Hsp_hit-to>157</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>26</Hsp_identity>
      <Hsp_positive>36</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>62</Hsp_align-len>
      <Hsp_qseq>TEDGLNAPFRCDHCGRLFMHKRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRH-RRIHTG</Hsp_qseq>
      <Hsp_hseq>TPSGKLRSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRCFTRRDLLIRHAQKIHSG</Hsp_hseq>
      <Hsp_midline>T  G    F C+ C R F  +  L+ H R+HT E+PY C  C++ F R D L RH ++IH+G</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>50.0618</Hsp_bit-score>
      <Hsp_score>118</Hsp_score>
      <Hsp_evalue>4.52818e-08</Hsp_evalue>
      <Hsp_query-from>328</Hsp_query-from>
      <Hsp_query-to>510</Hsp_query-to>
      <Hsp_hit-from>89</Hsp_hit-from>
      <Hsp_hit-to>150</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>22</Hsp_identity>
      <Hsp_positive>37</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>62</Hsp_align-len>
      <Hsp_qseq>SLRIHVRNHTGE-RPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQH</Hsp_qseq>
      <Hsp_hseq>NLRLNGRTPSGKLRSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRCFTRRDLLIRH</Hsp_hseq>
      <Hsp_midline>+LR++ R  +G+ R + C+ C + F R ++L RH R HT E+P+ C  C + F+    L +H</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>10</Hit_num>
  <Hit_id>YLR131C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XII:404510:406822:-1 gene:YLR131C transcript:YLR131C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ACE2 description:Transcription factor required for septum destruction after cytokinesis; phosphorylation by Cbk1p blocks nuclear exit during M/G1 transition, causing localization to daughter cell nuclei, and also increases Ace2p activity; phosphorylation by Cdc28p and Pho85p prevents nuclear import during cell cycle phases other than cytokinesis; part of RAM network that regulates cellular polarity and morphogenesis; ACE2 has a paralog, SWI5, that arose from the whole genome duplication [Source:SGD;Acc:S000004121]</Hit_def>
  <Hit_accession>YLR131C</Hit_accession>
  <Hit_len>770</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>56.225</Hsp_bit-score>
      <Hsp_score>134</Hsp_score>
      <Hsp_evalue>3.38101e-10</Hsp_evalue>
      <Hsp_query-from>286</Hsp_query-from>
      <Hsp_query-to>513</Hsp_query-to>
      <Hsp_hit-from>603</Hsp_hit-from>
      <Hsp_hit-to>680</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>29</Hsp_identity>
      <Hsp_positive>48</Hsp_positive>
      <Hsp_gaps>6</Hsp_gaps>
      <Hsp_align-len>80</Hsp_align-len>
      <Hsp_qseq>FRC--DHCGRLFMHKRSLRIHVRNHTGERPYACDF--CDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHR</Hsp_qseq>
      <Hsp_hseq>FECLYPNCNKVFKRRYNIRSHIQTHLQDRPYSCDFPGCTKAFVRNHDLIRHKISHNAKK-YICP-CGKRFNREDALMVHR</Hsp_hseq>
      <Hsp_midline>F C   +C ++F  + ++R H++ H  +RPY+CDF  C + F+R+ +L RH+  H  ++ + C  CGKRF+    L  HR</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>11</Hit_num>
  <Hit_id>YER130C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:V:421115:422446:-1 gene:YER130C transcript:YER130C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:COM2 description:Transcription factor that binds IME1 Upstream Activation Signal (UAS)ru; COM2 transcription is regulated by Haa1p, Sok2p and Zap1p transcriptional activators; may bind the IME1 promoter under all growth conditions to negatively regulate its transcription in the absence of a positive regulator that binds more effectively; repressor activity may depend on phosphorylation by PKA; C. albicans homolog (MNL1) plays a role in adaptation to stress [Source:SGD;Acc:S000000932]</Hit_def>
  <Hit_accession>YER130C</Hit_accession>
  <Hit_len>443</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>53.9138</Hsp_bit-score>
      <Hsp_score>128</Hsp_score>
      <Hsp_evalue>1.52822e-09</Hsp_evalue>
      <Hsp_query-from>358</Hsp_query-from>
      <Hsp_query-to>519</Hsp_query-to>
      <Hsp_hit-from>385</Hsp_hit-from>
      <Hsp_hit-to>439</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>24</Hsp_identity>
      <Hsp_positive>35</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>55</Hsp_align-len>
      <Hsp_qseq>GERPYACDFCDQRFLRSDNLTRH-RRIHTGERPFGCERCGKRFSCSHHLTQHRRS</Hsp_qseq>
      <Hsp_hseq>ASKQFGCEFCDRRFKRQEHLKRHVRSLHMCEKPFTCHICNKNFSRSDNLNQHVKT</Hsp_hseq>
      <Hsp_midline>  + + C+FCD+RF R ++L RH R +H  E+PF C  C K FS S +L QH ++</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>47.7506</Hsp_bit-score>
      <Hsp_score>112</Hsp_score>
      <Hsp_evalue>2.31246e-07</Hsp_evalue>
      <Hsp_query-from>286</Hsp_query-from>
      <Hsp_query-to>444</Hsp_query-to>
      <Hsp_hit-from>389</Hsp_hit-from>
      <Hsp_hit-to>442</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>22</Hsp_identity>
      <Hsp_positive>32</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>54</Hsp_align-len>
      <Hsp_qseq>FRCDHCGRLFMHKRSLRIHVRN-HTGERPYACDFCDQRFLRSDNLTRHRRIHTG</Hsp_qseq>
      <Hsp_hseq>FGCEFCDRRFKRQEHLKRHVRSLHMCEKPFTCHICNKNFSRSDNLNQHVKTHAS</Hsp_hseq>
      <Hsp_midline>F C+ C R F  +  L+ HVR+ H  E+P+ C  C++ F RSDNL +H + H  </Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>12</Hit_num>
  <Hit_id>YDR096W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:IV:637139:639823:1 gene:YDR096W transcript:YDR096W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GIS1 description:Histone demethylase and transcription factor; regulates genes during nutrient limitation; activity modulated by proteasome-mediated proteolysis; has JmjC and JmjN domain in N-terminus that interact, promoting stability and proper transcriptional activity; contains two transactivating domains downstream of Jmj domains and a C-terminal DNA binding domain; relocalizes to the cytosol in response to hypoxia; GIS1 has a paralog, RPH1, that arose from the whole genome duplication [Source:SGD;Acc:S000002503]</Hit_def>
  <Hit_accession>YDR096W</Hit_accession>
  <Hit_len>894</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>53.5286</Hsp_bit-score>
      <Hsp_score>127</Hsp_score>
      <Hsp_evalue>2.63628e-09</Hsp_evalue>
      <Hsp_query-from>370</Hsp_query-from>
      <Hsp_query-to>510</Hsp_query-to>
      <Hsp_hit-from>828</Hsp_hit-from>
      <Hsp_hit-to>875</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>22</Hsp_identity>
      <Hsp_positive>32</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>48</Hsp_align-len>
      <Hsp_qseq>YACDFCDQRFLRSDNLTRHRR-IHTGERPFGCERCGKRFSCSHHLTQH</Hsp_qseq>
      <Hsp_hseq>YICRECNRQFSSGHHLTRHKKSVHSGEKPHSCPRCGKRFKRRDHVLQH</Hsp_hseq>
      <Hsp_midline>Y C  C+++F    +LTRH++ +H+GE+P  C RCGKRF    H+ QH</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>13</Hit_num>
  <Hit_id>YER169W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:V:523369:525759:1 gene:YER169W transcript:YER169W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPH1 description:JmjC domain-containing histone demethylase; targets tri- and dimethylated H3K36; associates with actively transcribed regions and promotes elongation; repressor of autophagy-related genes in nutrient-replete conditions; damage-responsive repressor of PHR1; phosphorylated by the Rad53p-dependent DNA damage checkpoint pathway and by a Rim1p-mediated event during starvation; target of stress-induced hormesis; RPH1 has a paralog, GIS1, that arose from the whole genome duplication [Source:SGD;Acc:S000000971]</Hit_def>
  <Hit_accession>YER169W</Hit_accession>
  <Hit_len>796</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>53.1434</Hsp_bit-score>
      <Hsp_score>126</Hsp_score>
      <Hsp_evalue>4.20528e-09</Hsp_evalue>
      <Hsp_query-from>370</Hsp_query-from>
      <Hsp_query-to>510</Hsp_query-to>
      <Hsp_hit-from>709</Hsp_hit-from>
      <Hsp_hit-to>756</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>21</Hsp_identity>
      <Hsp_positive>31</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>48</Hsp_align-len>
      <Hsp_qseq>YACDFCDQRFLRSDNLTRHRR-IHTGERPFGCERCGKRFSCSHHLTQH</Hsp_qseq>
      <Hsp_hseq>YICKECQRKFSSGHHLTRHKKSVHSGEKPHSCPKCGKRFKRRDHVLQH</Hsp_hseq>
      <Hsp_midline>Y C  C ++F    +LTRH++ +H+GE+P  C +CGKRF    H+ QH</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>14</Hit_num>
  <Hit_id>YER028C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:V:210692:211876:-1 gene:YER028C transcript:YER028C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MIG3 description:Transcriptional regulator; partially nonfunctional in S288C strains but has a major role in catabolite repression and ethanol response in some other strains; involved in response to toxic agents; phosphorylation by Snf1p or the Mec1p pathway inactivates Mig3p, allowing induction of damage response genesenvironment [Source:SGD;Acc:S000000830]</Hit_def>
  <Hit_accession>YER028C</Hit_accession>
  <Hit_len>394</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>52.7582</Hsp_bit-score>
      <Hsp_score>125</Hsp_score>
      <Hsp_evalue>4.63054e-09</Hsp_evalue>
      <Hsp_query-from>244</Hsp_query-from>
      <Hsp_query-to>441</Hsp_query-to>
      <Hsp_hit-from>8</Hsp_hit-from>
      <Hsp_hit-to>70</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>30</Hsp_identity>
      <Hsp_positive>35</Hsp_positive>
      <Hsp_gaps>7</Hsp_gaps>
      <Hsp_align-len>68</Hsp_align-len>
      <Hsp_qseq>FPPVPPTEDGLNAPFRCDHCGRLFMHKRSLRIHVRNHTGERPYACDF--CDQRFLRSDNLTRHRRIHT</Hsp_qseq>
      <Hsp_hseq>FPP-----DNDQRPFRCEICSRGFHRLEHKKRHGRTHTGEKPHKCTVQGCPKSFSRSDELKRHLRTHT</Hsp_hseq>
      <Hsp_midline>FPP     D    PFRC+ C R F      + H R HTGE+P+ C    C + F RSD L RH R HT</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>45.8246</Hsp_bit-score>
      <Hsp_score>107</Hsp_score>
      <Hsp_evalue>1.11724e-06</Hsp_evalue>
      <Hsp_query-from>361</Hsp_query-from>
      <Hsp_query-to>519</Hsp_query-to>
      <Hsp_hit-from>14</Hsp_hit-from>
      <Hsp_hit-to>68</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>23</Hsp_identity>
      <Hsp_positive>33</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>55</Hsp_align-len>
      <Hsp_qseq>ERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGC--ERCGKRFSCSHHLTQHRRS</Hsp_qseq>
      <Hsp_hseq>QRPFRCEICSRGFHRLEHKKRHGRTHTGEKPHKCTVQGCPKSFSRSDELKRHLRT</Hsp_hseq>
      <Hsp_midline>+RP+ C+ C + F R ++  RH R HTGE+P  C  + C K FS S  L +H R+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>15</Hit_num>
  <Hit_id>YML081W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIII:104777:108532:1 gene:YML081W transcript:YML081W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TDA9 description:Transcription factor that regulates acetate production; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; null mutant is sensitive to expression of the top1-T722A allele; not an essential gene; TDA9 has a paralog, RSF2, that arose from the whole genome duplication [Source:SGD;Acc:S000004546]</Hit_def>
  <Hit_accession>YML081W</Hit_accession>
  <Hit_len>1251</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>52.373</Hsp_bit-score>
      <Hsp_score>124</Hsp_score>
      <Hsp_evalue>6.18253e-09</Hsp_evalue>
      <Hsp_query-from>364</Hsp_query-from>
      <Hsp_query-to>525</Hsp_query-to>
      <Hsp_hit-from>59</Hsp_hit-from>
      <Hsp_hit-to>112</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>20</Hsp_identity>
      <Hsp_positive>32</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>54</Hsp_align-len>
      <Hsp_qseq>RPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHRRSFQ</Hsp_qseq>
      <Hsp_hseq>RPFLCHICTRGFVRQEHLKRHQRAHTNEKPFLCVFCGRCFARRDLVLRHQHKLH</Hsp_hseq>
      <Hsp_midline>RP+ C  C + F+R ++L RH+R HT E+PF C  CG+ F+    + +H+    </Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>51.2174</Hsp_bit-score>
      <Hsp_score>121</Hsp_score>
      <Hsp_evalue>1.59307e-08</Hsp_evalue>
      <Hsp_query-from>283</Hsp_query-from>
      <Hsp_query-to>444</Hsp_query-to>
      <Hsp_hit-from>60</Hsp_hit-from>
      <Hsp_hit-to>114</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>22</Hsp_identity>
      <Hsp_positive>33</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>55</Hsp_align-len>
      <Hsp_qseq>PFRCDHCGRLFMHKRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRHR-RIHTG</Hsp_qseq>
      <Hsp_hseq>PFLCHICTRGFVRQEHLKRHQRAHTNEKPFLCVFCGRCFARRDLVLRHQHKLHSA</Hsp_hseq>
      <Hsp_midline>PF C  C R F+ +  L+ H R HT E+P+ C FC + F R D + RH+ ++H+ </Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>16</Hit_num>
  <Hit_id>YGR067C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VII:622372:624786:-1 gene:YGR067C transcript:YGR067C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative protein of unknown function; contains a zinc finger motif similar to that of Adr1p [Source:SGD;Acc:S000003299]</Hit_def>
  <Hit_accession>YGR067C</Hit_accession>
  <Hit_len>804</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>50.8322</Hsp_bit-score>
      <Hsp_score>120</Hsp_score>
      <Hsp_evalue>2.27214e-08</Hsp_evalue>
      <Hsp_query-from>358</Hsp_query-from>
      <Hsp_query-to>519</Hsp_query-to>
      <Hsp_hit-from>4</Hsp_hit-from>
      <Hsp_hit-to>57</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>21</Hsp_identity>
      <Hsp_positive>30</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>54</Hsp_align-len>
      <Hsp_qseq>GERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHRRS</Hsp_qseq>
      <Hsp_hseq>GQKKYICSFCLKPFSRSEHKIRHERSHAGVKPFQCQVCKHSFVRRDLLQRHIRT</Hsp_hseq>
      <Hsp_midline>G++ Y C FC + F RS++  RH R H G +PF C+ C   F     L +H R+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>17</Hit_num>
  <Hit_id>YPL230W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XVI:115312:116487:1 gene:YPL230W transcript:YPL230W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:USV1 description:Putative transcription factor containing a C2H2 zinc finger; mutation affects transcriptional regulation of genes involved in growth on non-fermentable carbon sources, response to salt stress and cell wall biosynthesis; USV1 has a paralog, RGM1, that arose from the whole genome duplication [Source:SGD;Acc:S000006151]</Hit_def>
  <Hit_accession>YPL230W</Hit_accession>
  <Hit_len>391</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>50.447</Hsp_bit-score>
      <Hsp_score>119</Hsp_score>
      <Hsp_evalue>2.66897e-08</Hsp_evalue>
      <Hsp_query-from>379</Hsp_query-from>
      <Hsp_query-to>519</Hsp_query-to>
      <Hsp_hit-from>47</Hsp_hit-from>
      <Hsp_hit-to>93</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>24</Hsp_identity>
      <Hsp_positive>29</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>47</Hsp_align-len>
      <Hsp_qseq>DFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHRRS</Hsp_qseq>
      <Hsp_hseq>DGCTMSFTRAEHLARHIRKHTGEKPFQCPACLKFFSRVDNLKQHRES</Hsp_hseq>
      <Hsp_midline>D C   F R+++L RH R HTGE+PF C  C K FS   +L QHR S</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>45.8246</Hsp_bit-score>
      <Hsp_score>107</Hsp_score>
      <Hsp_evalue>8.80471e-07</Hsp_evalue>
      <Hsp_query-from>286</Hsp_query-from>
      <Hsp_query-to>429</Hsp_query-to>
      <Hsp_hit-from>41</Hsp_hit-from>
      <Hsp_hit-to>91</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>22</Hsp_identity>
      <Hsp_positive>28</Hsp_positive>
      <Hsp_gaps>3</Hsp_gaps>
      <Hsp_align-len>51</Hsp_align-len>
      <Hsp_qseq>FRC---DHCGRLFMHKRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRHR</Hsp_qseq>
      <Hsp_hseq>FKCTGYDGCTMSFTRAEHLARHIRKHTGEKPFQCPACLKFFSRVDNLKQHR</Hsp_hseq>
      <Hsp_midline>F+C   D C   F     L  H+R HTGE+P+ C  C + F R DNL +HR</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>18</Hit_num>
  <Hit_id>YJR127C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:X:658917:663059:-1 gene:YJR127C transcript:YJR127C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RSF2 description:Zinc-finger protein; involved in transcriptional control of both nuclear and mitochondrial genes, many of which specify products required for glycerol-based growth, respiration, and other functions; RSF2 has a paralog, TDA9, that arose from the whole genome duplication; relocalizes from nucleus to cytoplasm upon DNA replication stress [Source:SGD;Acc:S000003888]</Hit_def>
  <Hit_accession>YJR127C</Hit_accession>
  <Hit_len>1380</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>50.0618</Hsp_bit-score>
      <Hsp_score>118</Hsp_score>
      <Hsp_evalue>4.01893e-08</Hsp_evalue>
      <Hsp_query-from>283</Hsp_query-from>
      <Hsp_query-to>432</Hsp_query-to>
      <Hsp_hit-from>150</Hsp_hit-from>
      <Hsp_hit-to>199</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>21</Hsp_identity>
      <Hsp_positive>30</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>50</Hsp_align-len>
      <Hsp_qseq>PFRCDHCGRLFMHKRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRHRR</Hsp_qseq>
      <Hsp_hseq>PFLCPTCTRGFVRQEHLKRHQHSHTREKPYLCIFCGRCFARRDLVLRHQQ</Hsp_hseq>
      <Hsp_midline>PF C  C R F+ +  L+ H  +HT E+PY C FC + F R D + RH++</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>46.2098</Hsp_bit-score>
      <Hsp_score>108</Hsp_score>
      <Hsp_evalue>8.51446e-07</Hsp_evalue>
      <Hsp_query-from>364</Hsp_query-from>
      <Hsp_query-to>525</Hsp_query-to>
      <Hsp_hit-from>149</Hsp_hit-from>
      <Hsp_hit-to>202</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>18</Hsp_identity>
      <Hsp_positive>32</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>54</Hsp_align-len>
      <Hsp_qseq>RPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHRRSFQ</Hsp_qseq>
      <Hsp_hseq>RPFLCPTCTRGFVRQEHLKRHQHSHTREKPYLCIFCGRCFARRDLVLRHQQKLH</Hsp_hseq>
      <Hsp_midline>RP+ C  C + F+R ++L RH+  HT E+P+ C  CG+ F+    + +H++   </Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>19</Hit_num>
  <Hit_id>YGL254W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VII:22304:23203:1 gene:YGL254W transcript:YGL254W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FZF1 description:Transcription factor involved in sulfite metabolism; sole identified regulatory target is SSU1; overexpression suppresses sulfite-sensitivity of many unrelated mutants due to hyperactivation of SSU1, contains five zinc fingers; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000003223]</Hit_def>
  <Hit_accession>YGL254W</Hit_accession>
  <Hit_len>299</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>48.9062</Hsp_bit-score>
      <Hsp_score>115</Hsp_score>
      <Hsp_evalue>8.49545e-08</Hsp_evalue>
      <Hsp_query-from>286</Hsp_query-from>
      <Hsp_query-to>525</Hsp_query-to>
      <Hsp_hit-from>12</Hsp_hit-from>
      <Hsp_hit-to>95</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>26</Hsp_identity>
      <Hsp_positive>45</Hsp_positive>
      <Hsp_gaps>4</Hsp_gaps>
      <Hsp_align-len>84</Hsp_align-len>
      <Hsp_qseq>FRC--DHCGRLFMHKRSLRIHVRNHTGERPYACDF--CDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHRRSFQ</Hsp_qseq>
      <Hsp_hseq>YKCSFDGCEKVYNRPSLLQQHQNSHTNQKPYHCDEPGCGKKFIRPCHLRVHKWTHSQIKPKACTLCQKRFVTNQQLRRHLNSHE</Hsp_hseq>
      <Hsp_midline>++C  D C +++     L+ H  +HT ++PY CD   C ++F+R  +L  H+  H+  +P  C  C KRF  +  L +H  S +</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>20</Hit_num>
  <Hit_id>YMR182C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIII:624532:625167:-1 gene:YMR182C transcript:YMR182C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RGM1 description:Putative zinc finger DNA binding transcription factor; contains two N-terminal C2H2 zinc fingers and C-terminal proline rich domain; overproduction impairs cell growth and induces expression of genes involved in monosaccharide catabolism and aldehyde metabolism; regulates expression of of Y&apos; telomeric elements and subtelomeric COS genes; relocalizes to the cytosol in response to hypoxia; RGM1 has a paralog, USV1, that arose from the whole genome duplication [Source:SGD;Acc:S000004794]</Hit_def>
  <Hit_accession>YMR182C</Hit_accession>
  <Hit_len>211</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>46.2098</Hsp_bit-score>
      <Hsp_score>108</Hsp_score>
      <Hsp_evalue>4.78305e-07</Hsp_evalue>
      <Hsp_query-from>385</Hsp_query-from>
      <Hsp_query-to>522</Hsp_query-to>
      <Hsp_hit-from>27</Hsp_hit-from>
      <Hsp_hit-to>72</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>22</Hsp_identity>
      <Hsp_positive>29</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>46</Hsp_align-len>
      <Hsp_qseq>CDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHRRSF</Hsp_qseq>
      <Hsp_hseq>CNMSFNRTEHLARHIRKHTGEKPFQCNICLKFFSRIDNLRQHQSSV</Hsp_hseq>
      <Hsp_midline>C+  F R+++L RH R HTGE+PF C  C K FS   +L QH+ S </Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>21</Hit_num>
  <Hit_id>YPR186C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XVI:909733:911022:-1 gene:YPR186C transcript:YPR186C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PZF1 description:Transcription factor IIIA (TFIIIA); essential DNA binding protein required for transcription of 5S rRNA by RNA polymerase III; not involved in transcription of other RNAP III genes; nine conserved zinc fingers; may also bind 5S rRNA [Source:SGD;Acc:S000006390]</Hit_def>
  <Hit_accession>YPR186C</Hit_accession>
  <Hit_len>429</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>45.8246</Hsp_bit-score>
      <Hsp_score>107</Hsp_score>
      <Hsp_evalue>1.00635e-06</Hsp_evalue>
      <Hsp_query-from>286</Hsp_query-from>
      <Hsp_query-to>510</Hsp_query-to>
      <Hsp_hit-from>49</Hsp_hit-from>
      <Hsp_hit-to>126</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>25</Hsp_identity>
      <Hsp_positive>38</Hsp_positive>
      <Hsp_gaps>3</Hsp_gaps>
      <Hsp_align-len>78</Hsp_align-len>
      <Hsp_qseq>FRCDH--CGRLFMHKRSLRIH-VRNHTGERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQH</Hsp_qseq>
      <Hsp_hseq>YFCDYDGCDKAFTRPSILTEHQLSVHQGLRAFQCDKCAKSFVKKSHLERHLYTHSDTKPFQCSYCGKGVTTRQQLKRH</Hsp_hseq>
      <Hsp_midline>+ CD+  C + F     L  H +  H G R + CD C + F++  +L RH   H+  +PF C  CGK  +    L +H</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>45.0542</Hsp_bit-score>
      <Hsp_score>105</Hsp_score>
      <Hsp_evalue>1.78701e-06</Hsp_evalue>
      <Hsp_query-from>271</Hsp_query-from>
      <Hsp_query-to>483</Hsp_query-to>
      <Hsp_hit-from>76</Hsp_hit-from>
      <Hsp_hit-to>145</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>26</Hsp_identity>
      <Hsp_positive>36</Hsp_positive>
      <Hsp_gaps>5</Hsp_gaps>
      <Hsp_align-len>73</Hsp_align-len>
      <Hsp_qseq>GLNAPFRCDHCGRLFMHKRSLRIHVRNHTGERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGC--ERCGKRF</Hsp_qseq>
      <Hsp_hseq>GLRA-FQCDKCAKSFVKKSHLERHLYTHSDTKPFQCSYCGKGVTTRQQLKRHEVTHT--KSFICPEEGCNLRF</Hsp_hseq>
      <Hsp_midline>GL A F+CD C + F+ K  L  H+  H+  +P+ C +C +       L RH   HT  + F C  E C  RF</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>22</Hit_num>
  <Hit_id>YHL027W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VIII:51111:52988:1 gene:YHL027W transcript:YHL027W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RIM101 description:Cys2His2 zinc-finger transcriptional repressor; involved in alkaline responsive gene repression as part of adaptation to alkaline conditions; involved in cell wall assembly; required for alkaline pH-stimulated haploid invasive growth and sporulation; activated by alkaline-dependent proteolytic processing which results in removal of the C-terminal tail; similar to A. nidulans PacC [Source:SGD;Acc:S000001019]</Hit_def>
  <Hit_accession>YHL027W</Hit_accession>
  <Hit_len>625</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>45.0542</Hsp_bit-score>
      <Hsp_score>105</Hsp_score>
      <Hsp_evalue>2.25154e-06</Hsp_evalue>
      <Hsp_query-from>295</Hsp_query-from>
      <Hsp_query-to>510</Hsp_query-to>
      <Hsp_hit-from>151</Hsp_hit-from>
      <Hsp_hit-to>230</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>24</Hsp_identity>
      <Hsp_positive>39</Hsp_positive>
      <Hsp_gaps>8</Hsp_gaps>
      <Hsp_align-len>80</Hsp_align-len>
      <Hsp_qseq>DHCGRLFMHKRSLRIHV-RNHTGERPYA-----CDF--CDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQH</Hsp_qseq>
      <Hsp_hseq>DNCGMIFNQPELLYNHLCHDHVGRKSHKNLQLNCHWGDCTTKTEKRDHITSHLRVHVPLKPFGCSTCSKKFKRPQDLKKH</Hsp_hseq>
      <Hsp_midline>D+CG +F     L  H+  +H G + +      C +  C  +  + D++T H R+H   +PFGC  C K+F     L +H</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>23</Hit_num>
  <Hit_id>YDR253C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:IV:963990:964565:-1 gene:YDR253C transcript:YDR253C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MET32 description:Zinc-finger DNA-binding transcription factor; involved in transcriptional regulation of the methionine biosynthetic genes; targets strong transcriptional activator Met4p to promoters of sulfur metabolic genes; feedforward loop exists in the regulation of genes controlled by Met4p and Met32p; lack of such a loop for MET31 may account for the differential actions of Met32p and Met31p; MET32 has a paralog, MET31, that arose from the whole genome duplication [Source:SGD;Acc:S000002661]</Hit_def>
  <Hit_accession>YDR253C</Hit_accession>
  <Hit_len>191</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>43.5134</Hsp_bit-score>
      <Hsp_score>101</Hsp_score>
      <Hsp_evalue>3.75489e-06</Hsp_evalue>
      <Hsp_query-from>346</Hsp_query-from>
      <Hsp_query-to>510</Hsp_query-to>
      <Hsp_hit-from>90</Hsp_hit-from>
      <Hsp_hit-to>144</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>22</Hsp_identity>
      <Hsp_positive>29</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>55</Hsp_align-len>
      <Hsp_qseq>RNHTGERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQH</Hsp_qseq>
      <Hsp_hseq>RNSTGEKRFKCAKCSLEFSRSSDLRRHEKTHFAILPNICPQCGKGFARKDALKRH</Hsp_hseq>
      <Hsp_midline>RN TGE+ + C  C   F RS +L RH + H    P  C +CGK F+    L +H</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>24</Hit_num>
  <Hit_id>YBR066C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:II:370037:370699:-1 gene:YBR066C transcript:YBR066C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NRG2 description:Transcriptional repressor; mediates glucose repression and negatively regulates filamentous growth; activated in stochastic pulses of nuclear localization in response to low glucose [Source:SGD;Acc:S000000270]</Hit_def>
  <Hit_accession>YBR066C</Hit_accession>
  <Hit_len>220</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>43.1282</Hsp_bit-score>
      <Hsp_score>100</Hsp_score>
      <Hsp_evalue>5.11362e-06</Hsp_evalue>
      <Hsp_query-from>349</Hsp_query-from>
      <Hsp_query-to>519</Hsp_query-to>
      <Hsp_hit-from>145</Hsp_hit-from>
      <Hsp_hit-to>204</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>26</Hsp_identity>
      <Hsp_positive>34</Hsp_positive>
      <Hsp_gaps>3</Hsp_gaps>
      <Hsp_align-len>60</Hsp_align-len>
      <Hsp_qseq>NHTGERP-YACDFCDQRFLRSDNLTRHRRIHTGERPFGC--ERCGKRFSCSHHLTQHRRS</Hsp_qseq>
      <Hsp_hseq>NTAGQRTRHFCKICSTGFTTSGHLSRHNRIHTGEKNHICPHEGCGQRFSRHDNCNQHYRT</Hsp_hseq>
      <Hsp_midline>N  G+R  + C  C   F  S +L+RH RIHTGE+   C  E CG+RFS   +  QH R+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>25</Hit_num>
  <Hit_id>YPL038W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XVI:480535:481068:1 gene:YPL038W transcript:YPL038W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MET31 description:Zinc-finger DNA-binding transcription factor; targets strong transcriptional activator Met4p to promoters of sulfur metabolic genes; involved in transcriptional regulation of the methionine biosynthetic genes; feedforward loop controlling expression of MET32 and the lack of such a loop for MET31 may account for the differential actions of Met31p and Met32p; MET31 has a paralog, MET32, that arose from the whole genome duplication [Source:SGD;Acc:S000005959]</Hit_def>
  <Hit_accession>YPL038W</Hit_accession>
  <Hit_len>177</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>42.743</Hsp_bit-score>
      <Hsp_score>99</Hsp_score>
      <Hsp_evalue>5.43533e-06</Hsp_evalue>
      <Hsp_query-from>349</Hsp_query-from>
      <Hsp_query-to>522</Hsp_query-to>
      <Hsp_hit-from>86</Hsp_hit-from>
      <Hsp_hit-to>145</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>21</Hsp_identity>
      <Hsp_positive>32</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>60</Hsp_align-len>
      <Hsp_qseq>NHT--GERPYACDFCDQRFLRSDNLTRHRRIHTGERPFGCERCGKRFSCSHHLTQHRRSF</Hsp_qseq>
      <Hsp_hseq>NHSKEGAQLYSCAKCQLKFSRSSDLRRHEKVHSLVLPHICSNCGKGFARKDALKRHSNTL</Hsp_hseq>
      <Hsp_midline>NH+  G + Y+C  C  +F RS +L RH ++H+   P  C  CGK F+    L +H  + </Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>84</Statistics_hsp-len>
      <Statistics_eff-space>221808698</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
</Iteration>
<Iteration>
  <Iteration_iter-num>19</Iteration_iter-num>
  <Iteration_query-ID>Query_19</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053972-RA transcript Note:&quot;Similar to Zfp37 Zinc finger protein 37 (Rattus norvegicus)&quot; offset:98 AED:0.10 eAED:0.10 QI:98|0.5|1|1|0.5|0.6|5|826|446</Iteration_query-def>
  <Iteration_query-len>2265</Iteration_query-len>
<Iteration_hits>
<Hit>
  <Hit_num>1</Hit_num>
  <Hit_id>YJL056C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:X:330431:333073:-1 gene:YJL056C transcript:YJL056C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZAP1 description:Zinc-regulated transcription factor; binds to zinc-responsive promoters to induce transcription of certain genes in presence of zinc, represses other genes in low zinc; regulates its own transcription; contains seven zinc-finger domains [Source:SGD;Acc:S000003592]</Hit_def>
  <Hit_accession>YJL056C</Hit_accession>
  <Hit_len>880</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>67.781</Hsp_bit-score>
      <Hsp_score>164</Hsp_score>
      <Hsp_evalue>4.50949e-12</Hsp_evalue>
      <Hsp_query-from>1122</Hsp_query-from>
      <Hsp_query-to>1364</Hsp_query-to>
      <Hsp_hit-from>766</Hsp_hit-from>
      <Hsp_hit-to>850</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>34</Hsp_identity>
      <Hsp_positive>45</Hsp_positive>
      <Hsp_gaps>4</Hsp_gaps>
      <Hsp_align-len>85</Hsp_align-len>
      <Hsp_qseq>KPYQCRVCGQKFRHLQYFRKHERTHAGEVLFTCEECGKVFLQSVDLIRHRRIHTGEKPFVCVECGMTF----RLKHHLLGHQQRH</Hsp_qseq>
      <Hsp_hseq>KPYKCKTCKRCFSSEETLVQHTRTHSGEKPYKCHICNKKFAISSSLKIHIRTHTGEKPLQCKICGKRFNESSNLSKHIKTHQKKY</Hsp_hseq>
      <Hsp_midline>KPY+C+ C + F   +   +H RTH+GE  + C  C K F  S  L  H R HTGEKP  C  CG  F     L  H+  HQ+++</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>60.077</Hsp_bit-score>
      <Hsp_score>144</Hsp_score>
      <Hsp_evalue>8.83384e-10</Hsp_evalue>
      <Hsp_query-from>1119</Hsp_query-from>
      <Hsp_query-to>1325</Hsp_query-to>
      <Hsp_hit-from>793</Hsp_hit-from>
      <Hsp_hit-to>859</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>27</Hsp_identity>
      <Hsp_positive>40</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>69</Hsp_align-len>
      <Hsp_qseq>EKPYQCRVCGQKFRHLQYFRKHERTHAGEVLFTCEECGKVFLQSVDLIRHRRIHTGEKPFVCVECGMTF</Hsp_qseq>
      <Hsp_hseq>EKPYKCHICNKKFAISSSLKIHIRTHTGEKPLQCKICGKRFNESSNLSKHIKTH--QKKYKCSDCSKSF</Hsp_hseq>
      <Hsp_midline>EKPY+C +C +KF      + H RTH GE    C+ CGK F +S +L +H + H  +K + C +C  +F</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>3</Hsp_num>
      <Hsp_bit-score>51.9878</Hsp_bit-score>
      <Hsp_score>123</Hsp_score>
      <Hsp_evalue>3.37079e-07</Hsp_evalue>
      <Hsp_query-from>1128</Hsp_query-from>
      <Hsp_query-to>1376</Hsp_query-to>
      <Hsp_hit-from>738</Hsp_hit-from>
      <Hsp_hit-to>822</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>27</Hsp_identity>
      <Hsp_positive>40</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>85</Hsp_align-len>
      <Hsp_qseq>YQC--RVCGQKFRHLQYFRKHERTHAGEVLFTCEECGKVFLQSVDLIRHRRIHTGEKPFVCVECGMTFRLKHHLLGHQQRHVREK</Hsp_qseq>
      <Hsp_hseq>YQCLWHDCHRTFPQRQKLIRHLKVHSKYKPYKCKTCKRCFSSEETLVQHTRTHSGEKPYKCHICNKKFAISSSLKIHIRTHTGEK</Hsp_hseq>
      <Hsp_midline>YQC    C + F   Q   +H + H+    + C+ C + F     L++H R H+GEKP+ C  C   F +   L  H + H  EK</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>2</Hit_num>
  <Hit_id>YOR113W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XV:534075:536819:1 gene:YOR113W transcript:YOR113W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AZF1 description:Zinc-finger transcription factor; involved in diauxic shift; in the presence of glucose, activates transcription of genes involved in growth and carbon metabolism; in nonfermentable carbon sources, activates transcription of genes involved in maintenance of cell wall integrity; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000005639]</Hit_def>
  <Hit_accession>YOR113W</Hit_accession>
  <Hit_len>914</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>64.3142</Hsp_bit-score>
      <Hsp_score>155</Hsp_score>
      <Hsp_evalue>5.6174e-11</Hsp_evalue>
      <Hsp_query-from>1122</Hsp_query-from>
      <Hsp_query-to>1376</Hsp_query-to>
      <Hsp_hit-from>591</Hsp_hit-from>
      <Hsp_hit-to>675</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>32</Hsp_identity>
      <Hsp_positive>43</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>85</Hsp_align-len>
      <Hsp_qseq>KPYQCRVCGQKFRHLQYFRKHERTHAGEVLFTCEECGKVFLQSVDLIRHRRIHTGEKPFVCVECGMTFRLKHHLLGHQQRHVREK</Hsp_qseq>
      <Hsp_hseq>KKHECPYCHRLFSQATHLEVHVRSHIGYKPFVCDYCGKRFTQGGNLRTHERLHTGEKPYSCDICDKKFSRKGNLAAHLVTHQKLK</Hsp_hseq>
      <Hsp_midline>K ++C  C + F    +   H R+H G   F C+ CGK F Q  +L  H R+HTGEKP+ C  C   F  K +L  H   H + K</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>63.1586</Hsp_bit-score>
      <Hsp_score>152</Hsp_score>
      <Hsp_evalue>1.03954e-10</Hsp_evalue>
      <Hsp_query-from>1068</Hsp_query-from>
      <Hsp_query-to>1373</Hsp_query-to>
      <Hsp_hit-from>600</Hsp_hit-from>
      <Hsp_hit-to>704</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>36</Hsp_identity>
      <Hsp_positive>51</Hsp_positive>
      <Hsp_gaps>3</Hsp_gaps>
      <Hsp_align-len>105</Hsp_align-len>
      <Hsp_qseq>RLHPSSAQLQLPCRIAV-EKPYQCRVCGQKFRHLQYFRKHERTHAGEVLFTCEECGKVFLQSVDLIRHRRIHTGEKPFVCV--ECGMTFRLKHHLLGHQQRHVRE</Hsp_qseq>
      <Hsp_hseq>RLFSQATHLEVHVRSHIGYKPFVCDYCGKRFTQGGNLRTHERLHTGEKPYSCDICDKKFSRKGNLAAHLVTHQKLKPFVCKLENCNKTFTQLGNMKAHQNRFHKE</Hsp_hseq>
      <Hsp_midline>RL   +  L++  R  +  KP+ C  CG++F      R HER H GE  ++C+ C K F +  +L  H   H   KPFVC    C  TF    ++  HQ R  +E</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>3</Hit_num>
  <Hit_id>YNL027W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XIV:579580:581616:1 gene:YNL027W transcript:YNL027W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CRZ1 description:Transcription factor, activates transcription of stress response genes; nuclear localization is positively regulated by calcineurin-mediated dephosphorylation; rapidly localizes to the nucleus under blue light stress; can be activated in stochastic pulses of nuclear localization in response to calcium [Source:SGD;Acc:S000004972]</Hit_def>
  <Hit_accession>YNL027W</Hit_accession>
  <Hit_len>678</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>58.9214</Hsp_bit-score>
      <Hsp_score>141</Hsp_score>
      <Hsp_evalue>1.83956e-09</Hsp_evalue>
      <Hsp_query-from>1128</Hsp_query-from>
      <Hsp_query-to>1304</Hsp_query-to>
      <Hsp_hit-from>569</Hsp_hit-from>
      <Hsp_hit-to>627</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>26</Hsp_identity>
      <Hsp_positive>33</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>59</Hsp_align-len>
      <Hsp_qseq>YQCRVCGQKFRHLQYFRKHERTHAGEVLFTCEECGKVFLQSVDLIRHRRIHTGEKPFVC</Hsp_qseq>
      <Hsp_hseq>FACDVCGKKFTRPYNLKSHLRTHTNERPFICSICGKAFARQHDRKRHEDLHTGKKRYVC</Hsp_hseq>
      <Hsp_midline>+ C VCG+KF      + H RTH  E  F C  CGK F +  D  RH  +HTG+K +VC</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>51.9878</Hsp_bit-score>
      <Hsp_score>123</Hsp_score>
      <Hsp_evalue>3.1587e-07</Hsp_evalue>
      <Hsp_query-from>1212</Hsp_query-from>
      <Hsp_query-to>1376</Hsp_query-to>
      <Hsp_hit-from>569</Hsp_hit-from>
      <Hsp_hit-to>623</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>22</Hsp_identity>
      <Hsp_positive>30</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>55</Hsp_align-len>
      <Hsp_qseq>FTCEECGKVFLQSVDLIRHRRIHTGEKPFVCVECGMTFRLKHHLLGHQQRHVREK</Hsp_qseq>
      <Hsp_hseq>FACDVCGKKFTRPYNLKSHLRTHTNERPFICSICGKAFARQHDRKRHEDLHTGKK</Hsp_hseq>
      <Hsp_midline>F C+ CGK F +  +L  H R HT E+PF+C  CG  F  +H    H+  H  +K</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>4</Hit_num>
  <Hit_id>YJR127C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:X:658917:663059:-1 gene:YJR127C transcript:YJR127C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RSF2 description:Zinc-finger protein; involved in transcriptional control of both nuclear and mitochondrial genes, many of which specify products required for glycerol-based growth, respiration, and other functions; RSF2 has a paralog, TDA9, that arose from the whole genome duplication; relocalizes from nucleus to cytoplasm upon DNA replication stress [Source:SGD;Acc:S000003888]</Hit_def>
  <Hit_accession>YJR127C</Hit_accession>
  <Hit_len>1380</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>49.6766</Hsp_bit-score>
      <Hsp_score>117</Hsp_score>
      <Hsp_evalue>1.58019e-06</Hsp_evalue>
      <Hsp_query-from>1212</Hsp_query-from>
      <Hsp_query-to>1361</Hsp_query-to>
      <Hsp_hit-from>151</Hsp_hit-from>
      <Hsp_hit-to>200</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>20</Hsp_identity>
      <Hsp_positive>30</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>50</Hsp_align-len>
      <Hsp_qseq>FTCEECGKVFLQSVDLIRHRRIHTGEKPFVCVECGMTFRLKHHLLGHQQR</Hsp_qseq>
      <Hsp_hseq>FLCPTCTRGFVRQEHLKRHQHSHTREKPYLCIFCGRCFARRDLVLRHQQK</Hsp_hseq>
      <Hsp_midline>F C  C + F++   L RH+  HT EKP++C+ CG  F  +  +L HQQ+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>5</Hit_num>
  <Hit_id>YGL209W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VII:95858:97006:1 gene:YGL209W transcript:YGL209W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MIG2 description:Zinc finger transcriptional repressor; cooperates with Mig1p in glucose-induced gene repression; under low glucose conditions relocalizes to mitochondrion, where it interacts with Ups1p, antagonizes mitochondrial fission factor Dnm1p, indicative of a role in mitochondrial fusion or regulating morphology; regulates filamentous growth in response to glucose depletion; activated in stochastic pulses of nuclear localization in response to low glucose [Source:SGD;Acc:S000003177]</Hit_def>
  <Hit_accession>YGL209W</Hit_accession>
  <Hit_len>382</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>48.9062</Hsp_bit-score>
      <Hsp_score>115</Hsp_score>
      <Hsp_evalue>1.70665e-06</Hsp_evalue>
      <Hsp_query-from>1122</Hsp_query-from>
      <Hsp_query-to>1289</Hsp_query-to>
      <Hsp_hit-from>15</Hsp_hit-from>
      <Hsp_hit-to>72</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>24</Hsp_identity>
      <Hsp_positive>35</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>58</Hsp_align-len>
      <Hsp_qseq>KPYQCRVCGQKFRHLQYFRKHERTHAGEVLFTCE--ECGKVFLQSVDLIRHRRIHTGE</Hsp_qseq>
      <Hsp_hseq>RPFRCDTCHRGFHRLEHKKRHLRTHTGEKPHHCAFPGCGKSFSRSDELKRHMRTHTGQ</Hsp_hseq>
      <Hsp_midline>+P++C  C + F  L++ ++H RTH GE    C    CGK F +S +L RH R HTG+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>6</Hit_num>
  <Hit_id>YER028C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:V:210692:211876:-1 gene:YER028C transcript:YER028C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MIG3 description:Transcriptional regulator; partially nonfunctional in S288C strains but has a major role in catabolite repression and ethanol response in some other strains; involved in response to toxic agents; phosphorylation by Snf1p or the Mec1p pathway inactivates Mig3p, allowing induction of damage response genesenvironment [Source:SGD;Acc:S000000830]</Hit_def>
  <Hit_accession>YER028C</Hit_accession>
  <Hit_len>394</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>48.521</Hsp_bit-score>
      <Hsp_score>114</Hsp_score>
      <Hsp_evalue>2.73786e-06</Hsp_evalue>
      <Hsp_query-from>1119</Hsp_query-from>
      <Hsp_query-to>1283</Hsp_query-to>
      <Hsp_hit-from>14</Hsp_hit-from>
      <Hsp_hit-to>70</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>22</Hsp_identity>
      <Hsp_positive>35</Hsp_positive>
      <Hsp_gaps>2</Hsp_gaps>
      <Hsp_align-len>57</Hsp_align-len>
      <Hsp_qseq>EKPYQCRVCGQKFRHLQYFRKHERTHAGEVLFTC--EECGKVFLQSVDLIRHRRIHT</Hsp_qseq>
      <Hsp_hseq>QRPFRCEICSRGFHRLEHKKRHGRTHTGEKPHKCTVQGCPKSFSRSDELKRHLRTHT</Hsp_hseq>
      <Hsp_midline>++P++C +C + F  L++ ++H RTH GE    C  + C K F +S +L RH R HT</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>7</Hit_num>
  <Hit_id>YER169W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:V:523369:525759:1 gene:YER169W transcript:YER169W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPH1 description:JmjC domain-containing histone demethylase; targets tri- and dimethylated H3K36; associates with actively transcribed regions and promotes elongation; repressor of autophagy-related genes in nutrient-replete conditions; damage-responsive repressor of PHR1; phosphorylated by the Rad53p-dependent DNA damage checkpoint pathway and by a Rim1p-mediated event during starvation; target of stress-induced hormesis; RPH1 has a paralog, GIS1, that arose from the whole genome duplication [Source:SGD;Acc:S000000971]</Hit_def>
  <Hit_accession>YER169W</Hit_accession>
  <Hit_len>796</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>48.521</Hsp_bit-score>
      <Hsp_score>114</Hsp_score>
      <Hsp_evalue>3.1436e-06</Hsp_evalue>
      <Hsp_query-from>1209</Hsp_query-from>
      <Hsp_query-to>1430</Hsp_query-to>
      <Hsp_hit-from>708</Hsp_hit-from>
      <Hsp_hit-to>787</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>26</Hsp_identity>
      <Hsp_positive>43</Hsp_positive>
      <Hsp_gaps>6</Hsp_gaps>
      <Hsp_align-len>80</Hsp_align-len>
      <Hsp_qseq>LFTCEECGKVFLQSVDLIRHRR-IHTGEKPFVCVECGMTFRLKHHLLGHQQRHVR--EKERELDVVMLLP---PPDAAAA</Hsp_qseq>
      <Hsp_hseq>IYICKECQRKFSSGHHLTRHKKSVHSGEKPHSCPKCGKRFKRRDHVLQHLNKKIPCISNETTVDAPIMNPTVQPQDGKAA</Hsp_hseq>
      <Hsp_midline>++ C+EC + F     L RH++ +H+GEKP  C +CG  F+ + H+L H  + +     E  +D  ++ P   P D  AA</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>8</Hit_num>
  <Hit_id>YDR146C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:IV:748613:750742:-1 gene:YDR146C transcript:YDR146C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SWI5 description:Transcription factor that recruits Mediator and Swi/Snf complexes; activates transcription of genes expressed at the M/G1 phase boundary and in G1 phase; required for expression of the HO gene controlling mating type switching; localization to nucleus occurs during G1 and appears to be regulated by phosphorylation by Cdc28p kinase; SWI5 has a paralog, ACE2, that arose from the whole genome duplication [Source:SGD;Acc:S000002553]</Hit_def>
  <Hit_accession>YDR146C</Hit_accession>
  <Hit_len>709</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>47.7506</Hsp_bit-score>
      <Hsp_score>112</Hsp_score>
      <Hsp_evalue>5.46429e-06</Hsp_evalue>
      <Hsp_query-from>1119</Hsp_query-from>
      <Hsp_query-to>1367</Hsp_query-to>
      <Hsp_hit-from>547</Hsp_hit-from>
      <Hsp_hit-to>631</Hsp_hit-to>
      <Hsp_query-frame>3</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>27</Hsp_identity>
      <Hsp_positive>47</Hsp_positive>
      <Hsp_gaps>6</Hsp_gaps>
      <Hsp_align-len>87</Hsp_align-len>
      <Hsp_qseq>EKPYQCRV--CGQKFRHLQYFRKHERTHAGEVLFTCEE--CGKVFLQSVDLIRHRRIHTGEKPFVCVECGMTFRLKHHLLGHQQRHV</Hsp_qseq>
      <Hsp_hseq>DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDRPYSCDHPGCDKAFVRNHDLIRHKKSHQ-EKAYAC-PCGKKFNREDALVVHRSRMI</Hsp_hseq>
      <Hsp_midline>+K ++C    C + F+     R H +TH  +  ++C+   C K F+++ DLIRH++ H  EK + C  CG  F  +  L+ H+ R +</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>97</Statistics_hsp-len>
      <Statistics_eff-space>1496204486</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
</Iteration>
<Iteration>
  <Iteration_iter-num>20</Iteration_iter-num>
  <Iteration_query-ID>Query_20</Iteration_query-ID>
  <Iteration_query-def>PMZ_0053979-RA transcript Note:&quot;Similar to RAD54B DNA repair and recombination protein RAD54B (Gallus gallus)&quot; offset:171 AED:0.05 eAED:0.05 QI:171|0.71|0.73|0.93|0.42|0.4|15|1829|908</Iteration_query-def>
  <Iteration_query-len>4727</Iteration_query-len>
<Iteration_hits>
<Hit>
  <Hit_num>1</Hit_num>
  <Hit_id>YGL163C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VII:193707:196403:-1 gene:YGL163C transcript:YGL163C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAD54 description:DNA-dependent ATPase that stimulates strand exchange; modifies the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; member of the SWI/SNF family of DNA translocases; forms nuclear foci upon DNA replication stress [Source:SGD;Acc:S000003131]</Hit_def>
  <Hit_accession>YGL163C</Hit_accession>
  <Hit_len>898</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>342.043</Hsp_bit-score>
      <Hsp_score>876</Hsp_score>
      <Hsp_evalue>3.50461e-100</Hsp_evalue>
      <Hsp_query-from>1135</Hsp_query-from>
      <Hsp_query-to>2649</Hsp_query-to>
      <Hsp_hit-from>274</Hsp_hit-from>
      <Hsp_hit-to>853</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>226</Hsp_identity>
      <Hsp_positive>300</Hsp_positive>
      <Hsp_gaps>115</Hsp_gaps>
      <Hsp_align-len>600</Hsp_align-len>
      <Hsp_qseq>HQREGVVFLYEAVMGM----------------------------------RSPSVQGAILADEMGLGKTLQCIALVWTLLRQGPYGNRPSLHKVLIVTPGSLEHK-VEEFMK---------------------------------------SPIYPVLIISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKVFEEPIVQSHQPSASLEDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRRLLASPAVRSCLNRVTTDRSPHLVCISALKKLCNDPCLLYKTLQKAEALRK---------GQKKQDSEEEADVSLYDGLYEEFSLIYNPESTSKLESGKXXXXXXXXXXXSNSTQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLTTG-----------WKKTGVSGVVDAASSARSEHIRFSLEELRNLFTLHEGTCCFTHDLLGCP-CQGDGGILSGA</Hsp_qseq>
      <Hsp_hseq>HQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTESQKTEQNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKR-LIDKCIIVCPSSLVNNWANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLRRNVDQLKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKGVGG--SQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYNMPGSKARDVQTKYSAKF--SILERFLHKIKTESDDKI------------VLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVER---LFSSDNLRQLFQKNENTICETHETYHCKRCNAQGKQLKRA</Hsp_hseq>
      <Hsp_midline>HQ EGV FLY  V G+                                   +    G I+ADEMGLGKTLQCIAL+WTLLRQGP G R  + K +IV P SL +    E +K                                       + + PVLIISYE + R +D ++    GL++ DEGHRLKN    T +A+DS+ C RR++L+GTPIQNDL E+++++ F NPG+LGS A FRK FE PI++     A+ ++   GE +  +L  +   F++RRT +I  +YLP K E V+     PLQ +LY +L+ S  V+  +  V    S  L  I  LKKLCN P LL    +  +             G K +D + +        + E F      ES  K+            VL+SN TQ LD++ + C    YS VRLDGT  +++RQ L++ FN       +FLLSSKAGG G+NL+GA+RL+L D DWNPA D QA+ARVWRDGQ K   IYRF++TG            K +  S VVDA          FS + LR LF  +E T C TH+   C  C   G  L  A</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>2</Hit_num>
  <Hit_id>YBR073W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:II:383112:385988:1 gene:YBR073W transcript:YBR073W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RDH54 description:DNA-dependent ATPase; DNA recombination/repair translocase, supercoils DNA and promotes DNA strand opening; stimulates strand exchange by modifying dsDNA topology; involved in recombinational repair of DNA double-strand breaks (DSBs) during mitosis and meiosis; phosphorylated in Mec1p-, Rad53p-dependent way in response to one DSB; contributes to remodelling of nucleosomes; proposed to be involved in crossover interference; interacts with Dmc1p; stimulates Dmc1p and Rad51p [Source:SGD;Acc:S000000277]</Hit_def>
  <Hit_accession>YBR073W</Hit_accession>
  <Hit_len>958</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>319.701</Hsp_bit-score>
      <Hsp_score>818</Hsp_score>
      <Hsp_evalue>5.32936e-92</Hsp_evalue>
      <Hsp_query-from>1135</Hsp_query-from>
      <Hsp_query-to>2631</Hsp_query-to>
      <Hsp_hit-from>299</Hsp_hit-from>
      <Hsp_hit-to>859</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>207</Hsp_identity>
      <Hsp_positive>303</Hsp_positive>
      <Hsp_gaps>100</Hsp_gaps>
      <Hsp_align-len>580</Hsp_align-len>
      <Hsp_qseq>HQREGVVFLYEAVMGMRSPSVQ--------------------GAILADEMGLGKTLQCIALVWTLLRQGPYGNRPSL-----------HKVLIVTPGSL-------------------------------EHKVEEFMK-SPIYPVLIISYEMVLRCIDAVRVIP--FGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKVFEEPIVQSHQPSASLEDKQL--GETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRRLLASPAVRSCLNRVTTDRSPHLVCISALKKLCNDPCLLYKTLQKAEALRKGQKKQDSEEEADVSLYDGLYEEFSLIYNPESTSKLESGKXXXXXXXXXXXSNSTQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLTTG----------WKKTGVSGVVDAASSARSEHIR----FSLEELRNLFTLHEGTCCFTHDLLGCPCQGDG</Hsp_qseq>
      <Hsp_hseq>HQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTANRYNEELLEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDILQ--GARLDFGQLTF--SSSLGLITLLKKVCNSPGLVGSDPYYKSHIKDTQ----SQDSYSRSLNSGKLKVL---------MTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFG-FLLSAKSGGVGLNLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFSVHTDTKSNTHDLI-CSCDGLG</Hsp_hseq>
      <Hsp_midline>HQREGV F+Y+ +MG+  P+++                    G +LAD+MGLGKTL  I L+WTL+RQ P+ ++ S             K+L+V P +L                               +  V  F+K    Y VLII YE +L   + +        +++CDEGHRLKN + K  + + SL  +R++LLTGTPIQNDL EF++I++F+NPGILGS A+F++ F  PI ++   +    ++ L  GE R+ E+  +T  F+LRRT  I ++YLPPK + ++ C+P   QI  ++ +L     R    ++T   S  L  I+ LKK+CN P L+         ++  Q    S++    SL  G  +             L  G  +     VV+VSN TQ LD++    +  G S  RLDG+ P  QR  ++ +FN   +    FLLS+K+GGVGLNLVGASRL+L+D DWNP+ D+QAM+R+ RDGQ K   IYR +TTG            K  +S      S  R++       F+ E+L++LF++H  T   THDL+ C C G G</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>3</Hit_num>
  <Hit_id>YOR304W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XV:884514:887876:1 gene:YOR304W transcript:YOR304W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ISW2 description:ATP-dependent DNA translocase involved in chromatin remodeling; ATPase component that, with Itc1p, forms a complex required for repression of a-specific genes, INO1, and early meiotic genes during mitotic growth; the Isw2 complex exhibits basal levels of chromatin binding throughout the genome as well as target-specific chromatin interactions; targeted by Ume6p- and Sua7p-dependent DNA looping to many loci genome-wide [Source:SGD;Acc:S000005831]</Hit_def>
  <Hit_accession>YOR304W</Hit_accession>
  <Hit_len>1120</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>194.897</Hsp_bit-score>
      <Hsp_score>494</Hsp_score>
      <Hsp_evalue>1.09788e-50</Hsp_evalue>
      <Hsp_query-from>1201</Hsp_query-from>
      <Hsp_query-to>2463</Hsp_query-to>
      <Hsp_hit-from>204</Hsp_hit-from>
      <Hsp_hit-to>616</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>141</Hsp_identity>
      <Hsp_positive>219</Hsp_positive>
      <Hsp_gaps>76</Hsp_gaps>
      <Hsp_align-len>455</Hsp_align-len>
      <Hsp_qseq>GAILADEMGLGKTLQCIALVWTL--LRQ--GPYGNRPSLHKVLIVTPGSLEHKVEEFMK--------------------------SPIYPVLIISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKVFEEPIVQSHQPSASLEDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRRLLAS--PAVRSCLNRVTTDRSPHLVCISALKKLCNDPCLLYKTLQKAEALRKGQKKQDSEEEADVSLYDGLYEEFSLIYNPESTSKLES--GKXXXXXXXXXXXSNSTQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLT</Hsp_qseq>
      <Hsp_hseq>SGILADEMGLGKTLQTISFLGYLRYVKQIEGPF--------LIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSELFDEWFEQNNSEQDQ-----------EIVIQQLHSVLNPFLLRRVKADVEKSLLPKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVGK-REGKTRLLNIVMQLRKCCNHPYLF-------EGAEPGPPYTTDE---------------HLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVT</Hsp_hseq>
      <Hsp_midline>  ILADEMGLGKTLQ I+ +  L  ++Q  GP+        ++IV   +L++   EF+K                             + VLI SYEMV+R  +A++ + +  ++ DE HR+KN     +  I     K R+L+TGTP+QN+L E ++++ F+ P I G +  F + FE+   +  Q           E    +L  +   F+LRR +   ++ L PK E  V    T +QIQ Y+ LL     AV   + +    ++  L  +  L+K CN P L        E    G      E                LI+N      L+    +L+     V++ S  +++LD+L   C    + + R+DG+T   +R   ++ +N   S   VFLL+++AGG+G+NLV A  ++L+D DWNP  D+QAM R  R GQ K VH+YRF+T</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>4</Hit_num>
  <Hit_id>YJR035W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:X:497355:500612:1 gene:YJR035W transcript:YJR035W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAD26 description:Protein involved in transcription-coupled nucleotide excision repair; repairs UV-induced DNA lesions; recruitment to DNA lesions is dependent on an elongating RNA polymerase II; homolog of human CSB protein [Source:SGD;Acc:S000003796]</Hit_def>
  <Hit_accession>YJR035W</Hit_accession>
  <Hit_len>1085</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>184.111</Hsp_bit-score>
      <Hsp_score>466</Hsp_score>
      <Hsp_evalue>2.00378e-47</Hsp_evalue>
      <Hsp_query-from>1381</Hsp_query-from>
      <Hsp_query-to>2469</Hsp_query-to>
      <Hsp_hit-from>443</Hsp_hit-from>
      <Hsp_hit-to>782</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>116</Hsp_identity>
      <Hsp_positive>191</Hsp_positive>
      <Hsp_gaps>43</Hsp_gaps>
      <Hsp_align-len>373</Hsp_align-len>
      <Hsp_qseq>VLIISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKVFEEPIVQSHQPSASLEDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRRLLASPAVRSCLNRVTTDRSPHLVCISALKKLCNDPCLLYKTLQK-----AEALRKGQKKQDSEEEADVSLYDGLYEEFSLIYNPESTSKLESGKXXXXXXXXXXXSNSTQMLDVLARCCSSWG-----YSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLTTG</Hsp_qseq>
      <Hsp_hseq>ILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADVAKDLPQKKEMVLFCKLTKYQRSKYLEFLHS----SDLNQIQNGKRNVLFGIDILRKICNHPDLLDRDTKRHNPDYGDPKRSGKMQ--------------VVKQLLLLWHKQGYKAL-------------LFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNN--ESFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGG</Hsp_hseq>
      <Hsp_midline>+LI +Y  +    D +  + +   + DEGH+++N   + +     L    RI+L+GTPIQN+L E +S+ +F+ PG LG+   F++ F  PI      +A+    Q G   A  L+ L   ++LRR +    + LP K+E V+ C+ T  Q   Y   L S    S LN++   +   L  I  L+K+CN P LL +  ++      +  R G+ +              + ++  L+++ +    L             L + S QMLD+L    S+        +++R+DGTT +  RQ L++ FN+   +  VFLL+++ GG+G+NL GA+R++++D DWNP+ DMQA  R WR GQ + V IYR +  G</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>5</Hit_num>
  <Hit_id>YPL082C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XVI:398480:404083:-1 gene:YPL082C transcript:YPL082C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MOT1 description:Essential protein involved in regulation of transcription; removes Spt15p (TBP) from DNA via its C-terminal ATPase activity; may have a role in ensuring that soluble TBP is available to bind TATA-less promoters; forms a complex with TBP that binds TATA DNA with high affinity but with altered specificity; the Mot1p-Spt15p-DNA ternary complex contains unbent DNA; coregulates transcription with Spt16p through assembly of preinitiation complex and organization of nucleosomes [Source:SGD;Acc:S000006003]</Hit_def>
  <Hit_accession>YPL082C</Hit_accession>
  <Hit_len>1867</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>176.407</Hsp_bit-score>
      <Hsp_score>446</Hsp_score>
      <Hsp_evalue>1.03912e-44</Hsp_evalue>
      <Hsp_query-from>1207</Hsp_query-from>
      <Hsp_query-to>2496</Hsp_query-to>
      <Hsp_hit-from>1294</Hsp_hit-from>
      <Hsp_hit-to>1769</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>138</Hsp_identity>
      <Hsp_positive>220</Hsp_positive>
      <Hsp_gaps>48</Hsp_gaps>
      <Hsp_align-len>477</Hsp_align-len>
      <Hsp_qseq>ILADEMGLGKTLQCIALVWT--LLRQGPYGNRPSLHK----VLIVTPGSL----EHKVEE---FMKSPIYP-----------------VLIISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKVFEEPIVQSHQPSASLEDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRRLL---ASPAVRSCLNRVTTDRSPHLV-CISALKKLCNDPCLLYKTLQKAEALRKGQKKQDSEEEADVSLYDGLYEEFSLIYN----PESTSKLESGKXXXXXXXXXXXSNST---QMLDVLARCCSSW------GYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLTTGWKKTGVSGV</Hsp_qseq>
      <Hsp_hseq>ILCDDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTLRPQLSDADIIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTGLDLHDIINAPKLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSI-DCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGL</Hsp_hseq>
      <Hsp_midline>IL D+MGLGKTLQ I ++ +   LR+  Y    S+       LI+ P SL    E++ ++   F+K  +Y                  +++ SY++    +  +    +   + DEGH +KNS  K A A+  +    R++LTGTPIQN++ E +S+ +F+ PG LG+   F++ F +PI  S     S ++++ G      L +    F+LRR +E     LPPK      C    LQ QLY        +   +   N    D   H+   +  ++KLCN P L+        A  +   KQ   +  D+     L    +L++      E   K  S       + V+    +    Q+ D+L    +          +++RLDG+     RQ ++  FN   S     LL++K GG+GLNL GA  ++  + DWNP ND+QAM R  R GQ K V++YR +T G  +  + G+</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>6</Hit_num>
  <Hit_id>YBR245C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:II:708150:711539:-1 gene:YBR245C transcript:YBR245C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ISW1 description:ATPase subunit of imitation-switch (ISWI) class chromatin remodelers; with Ioc3p forms Isw1a complex involved in repression of transcription initiation; with Ioc2p and Ioc4p forms Isw1b complex involved in regulation of transcription elongation; Isw1b recruited to ORFs by H3K36 methylation and acts with Chd1p to prevent trans-histone exchange over coding regions; Isw1p import into nucleus depends on C-terminal bipartite nuclear targeting signal KRIR X19 KKAK [Source:SGD;Acc:S000000449]</Hit_def>
  <Hit_accession>YBR245C</Hit_accession>
  <Hit_len>1129</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>172.555</Hsp_bit-score>
      <Hsp_score>436</Hsp_score>
      <Hsp_evalue>7.90871e-44</Hsp_evalue>
      <Hsp_query-from>1201</Hsp_query-from>
      <Hsp_query-to>2463</Hsp_query-to>
      <Hsp_hit-from>216</Hsp_hit-from>
      <Hsp_hit-to>628</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>132</Hsp_identity>
      <Hsp_positive>208</Hsp_positive>
      <Hsp_gaps>60</Hsp_gaps>
      <Hsp_align-len>447</Hsp_align-len>
      <Hsp_qseq>GAILADEMGLGKTLQCIALVWTLLR----QGPY---GNRPSLHKVL------------IVTPGSLEHKVEEFMKSPI---YPVLIISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKVFEEPIVQSHQPSASLEDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRRLLAS--PAVRSCLNRVTTDRSPHLVCISALKKLCNDPCLLYKTLQKAEALRKGQKKQDSEEEADVSLYDGLYEEFSLIYNP--ESTSKLESGKXXXXXXXXXXXSNSTQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLT</Hsp_qseq>
      <Hsp_hseq>AGILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLLGCDFDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDWF---------SSESTEEDQ--DKIVKQLHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKKILEKDLDAVNGS-NGSKESKTRLLNIMMQLRKCCNHPYLF-----------------DGAEPGPPYTTDE-----HLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVT</Hsp_hseq>
      <Hsp_midline>  ILADEMGLGKTLQ I+ +  L       GP+     + +L+  L             +  G  E + E   K  +   + V+I SYE+++R    ++ I +  +I DE HR+KN     +  +     + R+L+TGTP+QN+L E ++++ F+ P I   A  F   F          S S E+ Q  +    +L  +   F+LRR +   +  L PK+E  +    + +Q + Y+++L     AV    N     ++  L  +  L+K CN P L                  D  E       D       L+YN            KL+     V++ S  +++LD+L   C    Y + R+DG+T    R   ++++N+  S   VFLL+++AGG+G+NL  A  +VLYD DWNP  D+QAM R  R GQ K V ++R +T</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>7</Hit_num>
  <Hit_id>YOR290C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XV:855147:860258:-1 gene:YOR290C transcript:YOR290C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SNF2 description:Catalytic subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; contains DNA-stimulated ATPase activity; functions interdependently in transcriptional activation with Snf5p and Snf6p [Source:SGD;Acc:S000005816]</Hit_def>
  <Hit_accession>YOR290C</Hit_accession>
  <Hit_len>1703</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>168.318</Hsp_bit-score>
      <Hsp_score>425</Hsp_score>
      <Hsp_evalue>2.95469e-42</Hsp_evalue>
      <Hsp_query-from>1201</Hsp_query-from>
      <Hsp_query-to>2499</Hsp_query-to>
      <Hsp_hit-from>787</Hsp_hit-from>
      <Hsp_hit-to>1235</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>139</Hsp_identity>
      <Hsp_positive>223</Hsp_positive>
      <Hsp_gaps>72</Hsp_gaps>
      <Hsp_align-len>477</Hsp_align-len>
      <Hsp_qseq>GAILADEMGLGKTLQCIALVWTLLR----QGPYGNRPSLHKVLIVTPGSLEHKVEEFMK------------SPI-------------YPVLIISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDS-LPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKVFEEPIVQS-HQPSASL-EDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRRLLASPA--VRSCLNRVTTDRSPHLVCISALKKLCNDPCLLYKTLQKAEALRKGQKKQDSEEEADVSLYDGLYEEFSLIYNPESTSKLESGKXXXXXXXXXXXSNSTQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLTT----------GWKKTGVSGVV</Hsp_qseq>
      <Hsp_hseq>NGILADEMGLGKTIQTISLLTYLYEMKNIRGPY--------LVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIR--RLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTR--------ETNDDIWRVAGKFELLDRIL----------PKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKV</Hsp_hseq>
      <Hsp_midline>  ILADEMGLGKT+Q I+L+  L      +GPY        ++IV   +L +   EF K            SP              + V++ ++E +++    +  + +  +I DEGHR+KN+  K +  +++      R++LTGTP+QN+L E ++++ FV P I  S  +F + F  P   +  Q    L E++ L   R   L ++   F+LRR ++  ++ LP K E VV C+ + LQ  +Y+++L      +    N+           I  LKK+CN P +  +   +    R        E   D+    G +E    I            KL+     V++    TQ++D++          ++RLDG T   +R  LL  FN+  S +  F+LS++AGG+GLNL  A  ++++D DWNP  D+QA  R  R GQ   V I R +TT           +KK  + G V</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>8</Hit_num>
  <Hit_id>YER164W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:V:505392:509798:1 gene:YER164W transcript:YER164W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CHD1 description:Chromatin remodeler that regulates various aspects of transcription; acts in in conjunction with Isw1b to regulate chromatin structure and maintain chromatin integrity during transcription elongation by RNAP II by preventing trans-histone exchange over coding regions; contains a chromo domain, a helicase domain and a DNA-binding domain; component of both the SAGA and SLIK complexes [Source:SGD;Acc:S000000966]</Hit_def>
  <Hit_accession>YER164W</Hit_accession>
  <Hit_len>1468</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>166.392</Hsp_bit-score>
      <Hsp_score>420</Hsp_score>
      <Hsp_evalue>1.17813e-41</Hsp_evalue>
      <Hsp_query-from>1201</Hsp_query-from>
      <Hsp_query-to>2463</Hsp_query-to>
      <Hsp_hit-from>396</Hsp_hit-from>
      <Hsp_hit-to>821</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>132</Hsp_identity>
      <Hsp_positive>216</Hsp_positive>
      <Hsp_gaps>63</Hsp_gaps>
      <Hsp_align-len>455</Hsp_align-len>
      <Hsp_qseq>GAILADEMGLGKTLQCIALV-WTLL---RQGPY-----------------GNRPSLHKVLIVTPGSLEHKVEEF----------MKSPIYPVLIISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKVFEEPIVQSHQPSASLEDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRRLLASPAVRSCLNRVTTDRSPH---LVCISALKKLCNDPCLLYKTLQKAEALRKGQKKQDSEEEADVSLYDGLYEEFSLIYNPESTSKLESGKXXXXXXXXXXXSNSTQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLT</Hsp_qseq>
      <Hsp_hseq>NGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPG--------RFTIDQEIDFENQDEEQ-------EEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNY--SAL--TAGAKGGHFSLLNIMNELKKASNHPYLF----DNAEE-RVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKD-----GHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVS</Hsp_hseq>
      <Hsp_midline>  ILADEMGLGKT+Q +A + W +    + GP+                    P L+ +  +        + E+           K+  + VL+ +YE +L+    +  I +  +  DE HRLKN+      +++S     R+L+TGTP+QN+++E  ++V F+ PG        R   ++ I   +Q           E    +L R    F+LRR ++  ++ LP K E ++    + +Q + Y+ +L      S L      +  H   L  ++ LKK  N P L       AE  R  QK  D +   +  L   +     ++   +  ++L+          V++ S   +MLD+L    S  G ++ RLDGT P +QR+  +++FNS  S   VFLLS++AGG+G+NL+ A  +V++D DWNP  D+QAMAR  R GQ   V +YR ++</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>9</Hit_num>
  <Hit_id>YFR038W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VI:229380:231941:1 gene:YFR038W transcript:YFR038W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IRC5 description:Putative ATPase containing the DEAD/H helicase-related sequence motif; null mutant displays increased levels of spontaneous Rad52p foci; SWAT-GFP and mCherry fusion proteins localize to the nucleus [Source:SGD;Acc:S000001934]</Hit_def>
  <Hit_accession>YFR038W</Hit_accession>
  <Hit_len>853</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>117.857</Hsp_bit-score>
      <Hsp_score>294</Hsp_score>
      <Hsp_evalue>4.33629e-27</Hsp_evalue>
      <Hsp_query-from>1135</Hsp_query-from>
      <Hsp_query-to>1902</Hsp_query-to>
      <Hsp_hit-from>225</Hsp_hit-from>
      <Hsp_hit-to>505</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>88</Hsp_identity>
      <Hsp_positive>139</Hsp_positive>
      <Hsp_gaps>59</Hsp_gaps>
      <Hsp_align-len>298</Hsp_align-len>
      <Hsp_qseq>HQREGV---VFLYEAVMGMRSPSVQGAILADEMGLGKTLQCIAL---VWTLLRQGPYGNRPSLHKVLIVTP-GSLEHKVEEFMK-SPIYPVL----------------------------IISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKVFEEPIVQSHQPSAS-----LEDKQLGETRAAELQRLTGLFVLRRTQEIN-QRYLPPKREFVVMCRPTPLQIQLYRRLLASPAVRSCLNRVTTD</Hsp_qseq>
      <Hsp_hseq>YQLEGLNWLITLYENGLN--------GILADEMGLGKTVQSIALLAFIYEMDTKGPF---------LVTAPLSTLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISNLHTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTMFKELIKD</Hsp_hseq>
      <Hsp_midline>+Q EG+   + LYE  +          ILADEMGLGKT+Q IAL   ++ +  +GP+         L+  P  +L++ + EF K +P  PVL                            I SYE++LR  D +    +  +I DEGHRLKN + +    +  +    R+LLTGTP+QN+L E +S++ F+ P I      F K F+   +     S S     L + +L +   + L  +   F+LRR +++     LPPKRE+++ C  T  Q + Y+  L     ++    +  D</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>95.9005</Hsp_bit-score>
      <Hsp_score>237</Hsp_score>
      <Hsp_evalue>2.58534e-20</Hsp_evalue>
      <Hsp_query-from>2152</Hsp_query-from>
      <Hsp_query-to>2457</Hsp_query-to>
      <Hsp_hit-from>626</Hsp_hit-from>
      <Hsp_hit-to>727</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>45</Hsp_identity>
      <Hsp_positive>62</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>102</Hsp_align-len>
      <Hsp_qseq>SNSTQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRF</Hsp_qseq>
      <Hsp_hseq>SQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRL</Hsp_hseq>
      <Hsp_midline>S    MLD++   C    ++  R+DG+     R+  LE FNS    H++FLLS++A G+G+NLVGA  +VL+D DWNP  D+QAM R  R GQ   V +YR </Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>10</Hit_num>
  <Hit_id>YDR334W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:IV:1135932:1140476:1 gene:YDR334W transcript:YDR334W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SWR1 description:Swi2/Snf2-related ATPase; structural component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; relocalizes to the cytosol in response to hypoxia; chronological aging factor that mediates lifespan extension by dietary restriction [Source:SGD;Acc:S000002742]</Hit_def>
  <Hit_accession>YDR334W</Hit_accession>
  <Hit_len>1514</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>106.686</Hsp_bit-score>
      <Hsp_score>265</Hsp_score>
      <Hsp_evalue>1.98123e-23</Hsp_evalue>
      <Hsp_query-from>2161</Hsp_query-from>
      <Hsp_query-to>2520</Hsp_query-to>
      <Hsp_hit-from>1272</Hsp_hit-from>
      <Hsp_hit-to>1387</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>54</Hsp_identity>
      <Hsp_positive>77</Hsp_positive>
      <Hsp_gaps>4</Hsp_gaps>
      <Hsp_align-len>120</Hsp_align-len>
      <Hsp_qseq>TQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLTTGWKKTGVSGVVDAASSAR</Hsp_qseq>
      <Hsp_hseq>TKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTD-SRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVS---EHTIESNILKKANQKR</Hsp_hseq>
      <Hsp_midline>T++LDVL +  +  GY ++RLDG T +  RQ L E FN+  S  +VF+LSS++GG+G+NL GA  ++ YD DWNPA D Q   R  R GQ + VHIYRF++   + T  S ++  A+  R</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>99.7525</Hsp_bit-score>
      <Hsp_score>247</Hsp_score>
      <Hsp_evalue>2.66508e-21</Hsp_evalue>
      <Hsp_query-from>1201</Hsp_query-from>
      <Hsp_query-to>1965</Hsp_query-to>
      <Hsp_hit-from>716</Hsp_hit-from>
      <Hsp_hit-to>999</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>78</Hsp_identity>
      <Hsp_positive>141</Hsp_positive>
      <Hsp_gaps>53</Hsp_gaps>
      <Hsp_align-len>296</Hsp_align-len>
      <Hsp_qseq>GAILADEMGLGKTLQCIALVWTLLRQ----GPYGNRPSLHKVLIVTPGSL---------------------------EHKVEEFMKSPIYPVLIISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGIL---------GSAAAFRKVFEEPIVQSHQPSASL-EDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRRLLASPAVRSCLNRVTTDRSPHLVCISALKKLCNDPCLL</Hsp_qseq>
      <Hsp_hseq>NGILADEMGLGKTIQTISLLAYLACEKENWGPH---------LIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKT-VAKLHQVLRPYLLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTKATL--ASGNFMSIVNCLMQLRKVCNHPNLF</Hsp_hseq>
      <Hsp_midline>  ILADEMGLGKT+Q I+L+  L  +    GP+         LIV P S+                           + K + + K   + V I+SY++V++   + +   +  ++ DE H +KN       A+ +   +RR+LLTGTP+QN+L E +S++ F+ P  +             AF++ F  P+ +  +   +  +DK+  +T  A+L ++   ++LRR +   ++ +P K E +V C+ +  Q  LY   ++    ++ L   + +    + C+  L+K+CN P L </Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>11</Hit_num>
  <Hit_id>YGL150C</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:VII:221104:225573:-1 gene:YGL150C transcript:YGL150C_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:INO80 description:ATPase and nucleosome spacing factor; subunit of complex containing actin and actin-related proteins that has chromatin remodeling activity and 3&apos; to 5&apos; DNA helicase activity in vitro; promotes nucleosome shifts in the 3 prime direction; has a role in modulating stress gene transcription [Source:SGD;Acc:S000003118]</Hit_def>
  <Hit_accession>YGL150C</Hit_accession>
  <Hit_len>1489</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>106.686</Hsp_bit-score>
      <Hsp_score>265</Hsp_score>
      <Hsp_evalue>2.01691e-23</Hsp_evalue>
      <Hsp_query-from>1201</Hsp_query-from>
      <Hsp_query-to>1965</Hsp_query-to>
      <Hsp_hit-from>726</Hsp_hit-from>
      <Hsp_hit-to>1017</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>82</Hsp_identity>
      <Hsp_positive>136</Hsp_positive>
      <Hsp_gaps>65</Hsp_gaps>
      <Hsp_align-len>306</Hsp_align-len>
      <Hsp_qseq>GAILADEMGLGKTLQCIALVWTLLRQ----GPYGNRPSLHKVLIVTPGSLEH----KVEEFM------------------------------KSPIYPVLIISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKVFEEPIVQSHQPSASLEDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRRLLA--SPAVRSCLNRVTTDRSPH-----------LVCISALKKLCNDPCLL</Hsp_qseq>
      <Hsp_hseq>NGILADEMGLGKTVQSISVLAHLAENHNIWGPF---------LVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIESHAEANTKLNQQQL-----RRLHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLYQVLKSQISTNYDAIENAATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDLF</Hsp_hseq>
      <Hsp_midline>  ILADEMGLGKT+Q I+++  L       GP+         L+VTP S  H    ++ +F+                              K+  + V++ SY+MV+   + ++ + +  +I DE   +K+S       + S  C+ R+LLTGTPIQN +QE ++++ F+ P +  S   F + F + I    + +  L  +QL       L  +   F+LRR ++  Q  L  K E  V+C  T  Q +LY+ L +  S    +  N  T D + +           +  +   +K+CN P L </Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>87.8113</Hsp_bit-score>
      <Hsp_score>216</Hsp_score>
      <Hsp_evalue>1.1162e-17</Hsp_evalue>
      <Hsp_query-from>2161</Hsp_query-from>
      <Hsp_query-to>2469</Hsp_query-to>
      <Hsp_hit-from>1325</Hsp_hit-from>
      <Hsp_hit-to>1426</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>41</Hsp_identity>
      <Hsp_positive>64</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>103</Hsp_align-len>
      <Hsp_qseq>TQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLTTG</Hsp_qseq>
      <Hsp_hseq>TKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQTNPEIF-VFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRG</Hsp_hseq>
      <Hsp_midline>T+M+D++    +   Y+ +RLDG++ +  R+ L+ ++ +      VFLLS++AGG+G+NL  A  ++ YD DWNP  D QAM R  R GQ + V +YR L  G</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>12</Hit_num>
  <Hit_id>YIL126W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:IX:117992:122071:1 gene:YIL126W transcript:YIL126W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:STH1 description:ATPase component of the RSC chromatin remodeling complex; required for expression of early meiotic genes; promotes base excision repair in chromatin; essential helicase-related protein homologous to Snf2p [Source:SGD;Acc:S000001388]</Hit_def>
  <Hit_accession>YIL126W</Hit_accession>
  <Hit_len>1359</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>97.8265</Hsp_bit-score>
      <Hsp_score>242</Hsp_score>
      <Hsp_evalue>8.10243e-21</Hsp_evalue>
      <Hsp_query-from>1201</Hsp_query-from>
      <Hsp_query-to>1818</Hsp_query-to>
      <Hsp_hit-from>490</Hsp_hit-from>
      <Hsp_hit-to>717</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>66</Hsp_identity>
      <Hsp_positive>111</Hsp_positive>
      <Hsp_gaps>22</Hsp_gaps>
      <Hsp_align-len>228</Hsp_align-len>
      <Hsp_qseq>GAILADEMGLGKTLQCIALVWTLLRQ----GPY---------GN--------RPSLHKVLIVTPGSLEHKVEEFMKSPIYPVLIISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSL-PCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKVFEEPIVQSHQPSASLEDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCR</Hsp_qseq>
      <Hsp_hseq>NGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRVGNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCK</Hsp_hseq>
      <Hsp_midline>  ILADEMGLGKT+Q I+L+  L       GP+          N         PSL+ ++     +  H ++  ++   + VL+ +YE +++    +    +  +I DEGHR+KN+  K +  I      + R++LTGTP+QN+L E ++++ FV P I  SA  F   F  P   +         ++        L ++   F+LRR ++  ++ LP K E V+ C+</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>93.5893</Hsp_bit-score>
      <Hsp_score>231</Hsp_score>
      <Hsp_evalue>1.78974e-19</Hsp_evalue>
      <Hsp_query-from>2161</Hsp_query-from>
      <Hsp_query-to>2466</Hsp_query-to>
      <Hsp_hit-from>817</Hsp_hit-from>
      <Hsp_hit-to>918</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>42</Hsp_identity>
      <Hsp_positive>62</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>102</Hsp_align-len>
      <Hsp_qseq>TQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLTT</Hsp_qseq>
      <Hsp_hseq>TQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITT</Hsp_hseq>
      <Hsp_midline>TQ++D++          ++RLDG+T   +R  +L  FN+  S +  FLLS++AGG+GLNL  A  ++++D DWNP  D+QA  R  R GQ   V I R +TT</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>13</Hit_num>
  <Hit_id>YAL019W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:I:114919:118314:1 gene:YAL019W transcript:YAL019W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FUN30 description:Snf2p family member with ATP-dependent chromatin remodeling activity; has a role in silencing at the mating type locus, telomeres and centromeres; enriched at centromeres and is required for correct chromatin structure around centromeres, as well as at the boundary element of the silent HMR; recruited to DNA double-strand breaks (DSBs) where it promotes 5&apos; strand resection of DSBs; potential Cdc28p substrate [Source:SGD;Acc:S000000017]</Hit_def>
  <Hit_accession>YAL019W</Hit_accession>
  <Hit_len>1131</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>93.9745</Hsp_bit-score>
      <Hsp_score>232</Hsp_score>
      <Hsp_evalue>1.11791e-19</Hsp_evalue>
      <Hsp_query-from>1207</Hsp_query-from>
      <Hsp_query-to>1851</Hsp_query-to>
      <Hsp_hit-from>594</Hsp_hit-from>
      <Hsp_hit-to>832</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>74</Hsp_identity>
      <Hsp_positive>124</Hsp_positive>
      <Hsp_gaps>50</Hsp_gaps>
      <Hsp_align-len>252</Hsp_align-len>
      <Hsp_qseq>ILADEMGLGKTLQCIALVWTLLRQGPYGNRPSLHKVLIVTPGS-LEHKVEEFMK-SPI--------------------------YPVLIISYEMVL---RCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGI-LGSAAAFRKVFEEPIV-----QSHQPSASLEDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRR</Hsp_qseq>
      <Hsp_hseq>ILADDMGLGKTCQVISF-FAYLKQI---NEPGPH--LVVVPSSTLENWLREFQKFAPALKIEPYYGSLQEREELRDILERNAGKYDVIVTTYNLAAGNKYDVSFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPNLFISKKESFDAIFKQRAKTTDDNKNHNPLLAQE----AITRAKTMMK---PFILRRRKDQVLKHLPPKHTHIQYCELNAIQKKIYDK</Hsp_hseq>
      <Hsp_midline>ILAD+MGLGKT Q I+  +  L+Q    N P  H  L+V P S LE+ + EF K +P                           Y V++ +Y +       +  ++   F +V+ DEGH LKNS+ +  + +  +    R+LLTGTP+QN+L+E  S++EF+ P + +    +F  +F++        ++H P  + E      TRA  + +    F+LRR ++   ++LPPK   +  C    +Q ++Y +</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>87.4261</Hsp_bit-score>
      <Hsp_score>215</Hsp_score>
      <Hsp_evalue>1.21109e-17</Hsp_evalue>
      <Hsp_query-from>2161</Hsp_query-from>
      <Hsp_query-to>2463</Hsp_query-to>
      <Hsp_hit-from>976</Hsp_hit-from>
      <Hsp_hit-to>1075</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>43</Hsp_identity>
      <Hsp_positive>65</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>101</Hsp_align-len>
      <Hsp_qseq>TQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLT</Hsp_qseq>
      <Hsp_hseq>TQVLDILEMVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDI-PIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLIT</Hsp_hseq>
      <Hsp_midline>TQ+LD+L    S+  Y ++RLDG+T V+ RQ L++ F        +F+LS+KAGG G+NLV A+ ++++D  +NP +D QA  R  R GQ K V+I   +T</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>14</Hit_num>
  <Hit_id>YBR114W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:II:467248:469620:1 gene:YBR114W transcript:YBR114W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAD16 description:Nucleotide excision repair (NER) protein; binds damaged DNA during NER; binds DNA in an ATP-dependent manner (with Rad7p) during NER; required for NER of non-transcribed chromatin; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex [Source:SGD;Acc:S000000318]</Hit_def>
  <Hit_accession>YBR114W</Hit_accession>
  <Hit_len>790</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>71.2478</Hsp_bit-score>
      <Hsp_score>173</Hsp_score>
      <Hsp_evalue>8.35611e-13</Hsp_evalue>
      <Hsp_query-from>1201</Hsp_query-from>
      <Hsp_query-to>1602</Hsp_query-to>
      <Hsp_hit-from>205</Hsp_hit-from>
      <Hsp_hit-to>369</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>51</Hsp_identity>
      <Hsp_positive>79</Hsp_positive>
      <Hsp_gaps>37</Hsp_gaps>
      <Hsp_align-len>168</Hsp_align-len>
      <Hsp_qseq>GAILADEMGLGKTLQCIALVWTLLRQGP------------YGNRPSLH-----KVLIVTPGSLEHKVEEFMKSPIYPVLIISY---EMVLRCID--------------AVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVN</Hsp_qseq>
      <Hsp_hseq>GGVLADEMGMGKTIQTIALLMNDLTKSPSLVVAPTVALMQWKNEIEQHTKGQLKIYIYHGASRTTDIKDLQG---YDVVLTTYAVLESVFRKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLN</Hsp_hseq>
      <Hsp_midline>G +LADEMG+GKT+Q IAL+   L + P            + N    H     K+ I    S    +++      Y V++ +Y   E V R  +               +  I F  VI DE H +K+    TA A+++L  ++R  L+GTP+QN + E YS++ F+N</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>67.3958</Hsp_bit-score>
      <Hsp_score>163</Hsp_score>
      <Hsp_evalue>1.45607e-11</Hsp_evalue>
      <Hsp_query-from>2152</Hsp_query-from>
      <Hsp_query-to>2457</Hsp_query-to>
      <Hsp_hit-from>644</Hsp_hit-from>
      <Hsp_hit-to>744</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>40</Hsp_identity>
      <Hsp_positive>58</Hsp_positive>
      <Hsp_gaps>1</Hsp_gaps>
      <Hsp_align-len>102</Hsp_align-len>
      <Hsp_qseq>SNSTQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRF</Hsp_qseq>
      <Hsp_hseq>SQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQC-EVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITRF</Hsp_hseq>
      <Hsp_midline>S  T MLD++       G+  V+L G+   +QR   ++ F +      VFL+S KAGGV LNL  AS++ + D  WNP+ + Q+  RV R GQ++ V I RF</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>15</Hit_num>
  <Hit_id>YLR032W</Hit_id>
  <Hit_def>pep chromosome:R64-1-1:XII:204991:208500:1 gene:YLR032W transcript:YLR032W_mRNA gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RAD5 description:DNA helicase/Ubiquitin ligase; involved in error-free DNA damage tolerance (DDT), replication fork regression during postreplication repair by template switching, error-prone translesion synthesis; promotes synthesis of free and PCNA-bound polyubiquitin chains by Ubc13p-Mms2p; forms nuclear foci upon DNA replication stress; associates with native telomeres, cooperates with homologous recombination in senescent cells; human homolog HLTF can complement yeast null mutant [Source:SGD;Acc:S000004022]</Hit_def>
  <Hit_accession>YLR032W</Hit_accession>
  <Hit_len>1169</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>63.929</Hsp_bit-score>
      <Hsp_score>154</Hsp_score>
      <Hsp_evalue>1.85775e-10</Hsp_evalue>
      <Hsp_query-from>1195</Hsp_query-from>
      <Hsp_query-to>2010</Hsp_query-to>
      <Hsp_hit-from>525</Hsp_hit-from>
      <Hsp_hit-to>863</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>96</Hsp_identity>
      <Hsp_positive>149</Hsp_positive>
      <Hsp_gaps>93</Hsp_gaps>
      <Hsp_align-len>352</Hsp_align-len>
      <Hsp_qseq>VQGAILADEMGLGKTLQCIALV--------------WTLLRQGPYGNRPSLHK----------VLIVTPGSLEHK-VEEFMKSPIYP---------------------------VLIISYEMVL---------RCIDAVRVIPFGL-------VICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILGSAAAFRKV-FEEPIVQSHQPSASLEDKQLGETRAAELQRLTGLFVLRRTQEINQR------YLPPKREFVVMCRP-TPLQIQLYRRLL--ASPAVRSCLNR--VTTDRSPHLVCISALKKLCNDPCLLYKTLQKAEALRKGQK</Hsp_qseq>
      <Hsp_hseq>IKGGILSDEMGLGKTVAAYSLVLSCPHDSDVVDKKLFDIENTAVSDNLPSTWQDNKKPYASKTTLIVVPMSLLTQWSNEFTKANNSPDMYHEVYYGGNVSSLKTLLTKTKTPPTVVLTTYGIVQNEWTKHSKGRMTDEDVNISSGLFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKWVLTGTPIINRLDDLYSLVKFL------ELDPWRQINYWKTFVST--PFESKNYKQAFDVVNAILEPV----LLRRTKQMKDKDGKPLVELPPK-EVVIKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHPGLIGSQDENDEDLSKNNK</Hsp_hseq>
      <Hsp_midline>++G IL+DEMGLGKT+   +LV              + +       N PS  +           LIV P SL  +   EF K+   P                           V++ +Y +V          R  D    I  GL       +I DEGH ++N +  T+ A+ +L  K + +LTGTPI N L + YS+V+F+          +R++ + +  V +  P  S   KQ  +   A L+ +    +LRRT+++  +       LPPK E V+   P +  Q  LY+ LL  A  +V+S + R  +    S  LV I  L+++C  P L+    +  E L K  K</Hsp_midline>
    </Hsp>
    <Hsp>
      <Hsp_num>2</Hsp_num>
      <Hsp_bit-score>61.2326</Hsp_bit-score>
      <Hsp_score>147</Hsp_score>
      <Hsp_evalue>1.12431e-09</Hsp_evalue>
      <Hsp_query-from>2218</Hsp_query-from>
      <Hsp_query-to>2565</Hsp_query-to>
      <Hsp_hit-from>1045</Hsp_hit-from>
      <Hsp_hit-to>1168</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>41</Hsp_identity>
      <Hsp_positive>63</Hsp_positive>
      <Hsp_gaps>14</Hsp_gaps>
      <Hsp_align-len>127</Hsp_align-len>
      <Hsp_qseq>RLDGTTPVSQRQHLLENFNSR-FSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRF----------LTTGWKKTGVSGVVDAASSARSEHIRFSLEELRNLF</Hsp_qseq>
      <Hsp_hseq>KFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAMDTDEDERRKR---RIEEIQMLF</Hsp_hseq>
      <Hsp_midline>+ DG   + +R  +L +F  + +S   + LLS KAGGVGLNL  AS   + D  W+P+ + QA+ R+ R GQ  +V + RF          L    KK  +   +D     R +     +EE++ LF</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>6600</Statistics_db-num>
      <Statistics_db-len>2914067</Statistics_db-len>
      <Statistics_hsp-len>103</Statistics_hsp-len>
      <Statistics_eff-space>3288841024</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
</Iteration>
</BlastOutput_iterations>
</BlastOutput>

